relax SVN archive

Merged revisions 4440,4447,4449-4450,4452-4458,4461 via svnmerge from
svn+ssh://semor@.../svn/relax/1.3

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r4440 | bugman | 2008-01-07 11:36:57 -0500 (Mon, 07 Jan 2008) | 3 lines

Created a directory for user scripts to be used as system/functional tests.
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r4447 | bugman | 2008-01-07 11:59:23 -0500 (Mon, 07 Jan 2008) | 5 lines

Added the quit argument to the run() class method.

This is to allow the system/functional tests to run this method and to ask relax not to quit.
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r4449 | bugman | 2008-01-07 12:09:07 -0500 (Mon, 07 Jan 2008) | 5 lines

Created a script containing the commands used in the system test for creating a model-free model.

The system test executes the script instead of running the commands itself.
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r4450 | bugman | 2008-01-07 12:15:09 -0500 (Mon, 07 Jan 2008) | 5 lines

The script file is now passed into the interpreter run() method.

This change is like to break many things!!!
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r4452 | bugman | 2008-01-07 12:19:07 -0500 (Mon, 07 Jan 2008) | 3 lines

Fixed the running of the script for the model-free m4 model creating system test.
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r4453 | bugman | 2008-01-07 12:28:57 -0500 (Mon, 07 Jan 2008) | 3 lines

Completely changed how the relax program introduction is handled.
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r4454 | bugman | 2008-01-07 12:35:50 -0500 (Mon, 07 Jan 2008) | 3 lines

Added the ability to turn off the printing out of the script prior to its execution.
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r4455 | bugman | 2008-01-07 12:36:51 -0500 (Mon, 07 Jan 2008) | 3 lines

Turned off the printing of the script prior to its execution in the system tests.
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r4456 | bugman | 2008-01-07 12:42:18 -0500 (Mon, 07 Jan 2008) | 5 lines

Shifted the quit option from run() to __init__().

This will remove the need for all system tests using a script to ask the interpreter to not exit.
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r4457 | bugman | 2008-01-07 12:42:52 -0500 (Mon, 07 Jan 2008) | 3 lines

Made the 'intro_string', 'quit', and 'show_script' variables private.
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r4458 | bugman | 2008-01-07 12:43:35 -0500 (Mon, 07 Jan 2008) | 3 lines

Passed the quit flag into the prompt mode of operation.
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r4461 | semor | 2008-01-07 12:58:13 -0500 (Mon, 07 Jan 2008) | 3 lines

Fixed a typo in an import statement.
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Introduced the ORIENTATION and TC values (used in consistency testing) in the physical constants.

ORIENTATION :
The angle between the 15N-1H vector and the principal axis of the 15N chemical shift tensor

TC :
The approximate correlation time.

Modified the functions specific to consistency testing.

This is not a simple copy of the jw mapping code anymore.

Modified the consistency tests prompt so it is not a simple copy of the jw mapping code anymore.

Modified the consistency tests math_fns code.

This is a copy of the 1.2 line code without the 'cos' import and with updated copyrights.

Updated the consistency_tests code in the test suite mainly by mimicking the jw_mapping code.

Jw mapping and consistency testing are performed in the same way so their code should be similar.

Fixed the copyrights for several files from the consistency testing code.

Fixed the copyrights for several files from the consistency testing code.

Enabled the importation of the consistency tests into the system tests.

Fixed a typo in an import statement.