relax SVN archive

Updated the J(w) mapping code to handle a spin system specific 'nucleus' variable.

The specific value setting function, of the base class, now handles string values.

Fixed all the unit tests of setting the heteronucleus type.

The variable will be called 'nucleus' and not 'heteronuc'.

Removed all the setting of the homonucleus unit tests.

Updated the model-free code to handle a spin system specific 'nucleus' variable.

Wrote 12 unit tests for using the value setting functions to set the hetero and homonuclei.

This is in preparation for replacing the nuclei() user function with the more powerful value.set().
The values also need to now be spin specific.

Shifted all the gyromagnetic ratio values into the physical constants file.

Another bug fix for the system tests calling the state.load() user function.

The 'dir' argument is now called 'dir_name'.

Bug fix for the system tests calling the state.load() user function.

The 'file' argument is now called 'state'.

Merged revisions 4338-4371 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

........
r4338 | bugman | 2008-01-05 17:09:45 +0100 (Sat, 05 Jan 2008) | 3 lines

Converted the pipe creation functional test to use the unittest framework.
........
r4339 | bugman | 2008-01-05 17:10:10 +0100 (Sat, 05 Jan 2008) | 3 lines

Removed the pipe creation test from the old system/functional test framework.
........
r4340 | bugman | 2008-01-05 17:20:36 +0100 (Sat, 05 Jan 2008) | 6 lines

Created a class called System_test_runner for executing the system/functional tests.

Whether this is replaced by Gary's Unit_test_runner, invokes Unit_test_runner, or is independent of
Unit_test_runner is not yet known.
........
r4341 | bugman | 2008-01-05 17:24:27 +0100 (Sat, 05 Jan 2008) | 3 lines

Renamed the pipe creation module to start with 'test_'.
........
r4342 | bugman | 2008-01-05 17:37:41 +0100 (Sat, 05 Jan 2008) | 5 lines

Added some code to execute the new system/functional tests.

This just runs the System_test_runner.run() method which doesn't do anything yet.
........
r4343 | bugman | 2008-01-05 17:50:15 +0100 (Sat, 05 Jan 2008) | 3 lines

Added the ability to run the new system/functional tests based on the unittest framework.
........
r4344 | bugman | 2008-01-05 17:52:24 +0100 (Sat, 05 Jan 2008) | 6 lines

Bug fix for the pipe creation system test.

The __init__ function should not be overwritten! The relax instance must be passed in by some other
method.
........
r4345 | bugman | 2008-01-05 18:01:08 +0100 (Sat, 05 Jan 2008) | 5 lines

Placed the relax namespace into the new system tests.

The relax namespace will now be available to all new TestCase class instances.
........
r4346 | bugman | 2008-01-05 18:01:50 +0100 (Sat, 05 Jan 2008) | 3 lines

Removed the unused 'runner' argument to System_test_runner.run().
........
r4347 | bugman | 2008-01-05 18:03:00 +0100 (Sat, 05 Jan 2008) | 3 lines

Fixed the reference to the now non-existent 'pipe' variable.
........
r4348 | bugman | 2008-01-05 18:04:53 +0100 (Sat, 05 Jan 2008) | 3 lines

System_test_runner.run() is no longer called with the runner argument.
........
r4349 | bugman | 2008-01-05 18:06:32 +0100 (Sat, 05 Jan 2008) | 3 lines

Added the missing import of the relax data storage object into the pipe creation system test.
........
r4350 | bugman | 2008-01-05 18:09:29 +0100 (Sat, 05 Jan 2008) | 3 lines

Shifted to RelaxTestRunner for the new system/functional tests to catch STDOUT.
........
r4351 | bugman | 2008-01-05 18:10:35 +0100 (Sat, 05 Jan 2008) | 3 lines

Added a missing newline.
........
r4352 | bugman | 2008-01-05 18:12:16 +0100 (Sat, 05 Jan 2008) | 3 lines

The results of the new system/functional test framework is now returned.
........
r4353 | bugman | 2008-01-05 18:27:07 +0100 (Sat, 05 Jan 2008) | 3 lines

Renamed the test suite running module to test_suite_runner.
........
r4354 | bugman | 2008-01-05 18:41:07 +0100 (Sat, 05 Jan 2008) | 5 lines

Split the Test_suite_runner.__init__() method into many smaller methods.

This is part of a clean up of the messy base structure of the relax test suite.
........
r4355 | bugman | 2008-01-05 18:45:36 +0100 (Sat, 05 Jan 2008) | 6 lines

Clean up of the operation of the --unit-tests and --system-tests command line options.

These now use the Test_suite_runner methods so that the 'relax' file need not deal with the
implementation details of the various test suite categories.
........
r4356 | bugman | 2008-01-05 19:02:54 +0100 (Sat, 05 Jan 2008) | 5 lines

Started to convert the model-free system tests to the new unittest framework.

The relaxation data reading test has been converted, but no other tests are currently functional.
........
r4357 | bugman | 2008-01-05 19:09:42 +0100 (Sat, 05 Jan 2008) | 5 lines

Bug fix for the new system/functional test framework.

Now all tests from all TestCase instances are run.
........
r4358 | bugman | 2008-01-05 19:13:30 +0100 (Sat, 05 Jan 2008) | 3 lines

Converted the CSA value setting test to the new framework.
........
r4359 | bugman | 2008-01-05 19:16:20 +0100 (Sat, 05 Jan 2008) | 3 lines

Converted the Bond length value setting test to the new system test framework.
........
r4360 | bugman | 2008-01-05 19:19:01 +0100 (Sat, 05 Jan 2008) | 3 lines

Converted the CSA and bond length value setting test to the new system test framework.
........
r4361 | bugman | 2008-01-05 20:09:19 +0100 (Sat, 05 Jan 2008) | 3 lines

Converted all of the model-free system/functional tests to the new unittest framework.
........
r4362 | bugman | 2008-01-05 20:19:57 +0100 (Sat, 05 Jan 2008) | 3 lines

Converted all of the diffusion tensor system/functional tests to the new unittest framework.
........
r4363 | bugman | 2008-01-05 20:25:44 +0100 (Sat, 05 Jan 2008) | 3 lines

Converted all of the angle system/functional tests to the new unittest framework.
........
r4364 | bugman | 2008-01-05 20:32:06 +0100 (Sat, 05 Jan 2008) | 3 lines

Converted all of the generic system/functional tests to the new unittest framework.
........
r4365 | bugman | 2008-01-05 20:39:03 +0100 (Sat, 05 Jan 2008) | 3 lines

Converted all of the model selection system/functional tests to the new unittest framework.
........
r4366 | bugman | 2008-01-05 20:44:13 +0100 (Sat, 05 Jan 2008) | 3 lines

Converted all of the relaxation curve fitting system/functional tests to the new unittest framework.
........
r4367 | bugman | 2008-01-05 20:58:57 +0100 (Sat, 05 Jan 2008) | 3 lines

Converted all the remaining system/functional tests to the new unittest framework.
........
r4368 | bugman | 2008-01-05 21:02:22 +0100 (Sat, 05 Jan 2008) | 3 lines

Removed all last remnants of the old system/functional test runner.
........
r4369 | bugman | 2008-01-05 21:04:54 +0100 (Sat, 05 Jan 2008) | 3 lines

Fixed the call to the residue_loop iterator in the Jw mapping system tests.
........
r4370 | bugman | 2008-01-05 21:06:44 +0100 (Sat, 05 Jan 2008) | 3 lines

The sequence system/functional tests are now run.
........
r4371 | bugman | 2008-01-05 21:08:14 +0100 (Sat, 05 Jan 2008) | 3 lines

Renamed the test_pipe_create module and class back to pipe_create.
........