relax SVN archive

Manually ported the bug fix of r4298 from the 1.3 line.

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r4298 | bugman | 2008-01-04 10:57:32 +0100 (Fri, 04 Jan 2008) | 6 lines
Changed paths:
M /1.3/generic_fns/diffusion_tensor.py

Bug fix for the generic_fns.diffusion_tensor.default_values() function.

For each parameter which defaults to zero, None was being returned instead!!! This bug was caught
by the unit tests of the setting of default diffusion tensor parameter values.
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Bug fix for the generic_fns.diffusion_tensor.default_values() function.

For each parameter which defaults to zero, None was being returned instead!!! This bug was caught
by the unit tests of the setting of default diffusion tensor parameter values.

Bug fixes for the unit tests of the setting of default values of the diff params.

The correct default values are now being checked, and some tests were made less stringent (using
assertAlmostEqual).

Manually ported the bug fix of r4295 from the 1.3 line.

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r4295 | bugman | 2008-01-04 10:35:22 +0100 (Fri, 04 Jan 2008) | 6 lines
Changed paths:
M /1.3/generic_fns/diffusion_tensor.py

Bug fix for the generic_fns.diffusion_tensor.set() function.

When setting a default value, the non-existant array 'object_names' was being accessed. The array
is actually 'params'!
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Bug fix for the generic_fns.diffusion_tensor.set() function.

When setting a default value, the non-existant array 'object_names' was being accessed. The array
is actually 'params'!

Wrote the unit tests for the settubg if default diffusion tensor parameter values.

Changed the name of all the diffusion tensor parameter setting unit tests.

This is to prepare for unit tests checking the default values.

Merged revisions 4272-4291 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r4272 | bugman | 2008-01-03 15:52:24 +0100 (Thu, 03 Jan 2008) | 5 lines

Finished converting generic_fns.value.set() to the new relax design.

The function is now considerably simpler.
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r4273 | bugman | 2008-01-03 15:57:05 +0100 (Thu, 03 Jan 2008) | 5 lines

Fixed 2 of the diffusion tensor parameter setting unit tests.

These are the invalid parameter combinations, where the RelaxUnknownParamCombError is thrown.
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r4274 | bugman | 2008-01-03 15:59:55 +0100 (Thu, 03 Jan 2008) | 5 lines

Bug fix for the generic_fns.diffusion_tensor.set() function.

For detecting the parameter combination {Dpar, Dper}, Dpar was being checked twice!
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r4276 | bugman | 2008-01-03 16:12:47 +0100 (Thu, 03 Jan 2008) | 3 lines

Updated the return_value() method of the Common_functions base class to the new relax design.
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r4277 | bugman | 2008-01-03 17:18:57 +0100 (Thu, 03 Jan 2008) | 3 lines

Updated the set() method of the Common_functions base class to the new relax design.
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r4278 | bugman | 2008-01-03 17:19:57 +0100 (Thu, 03 Jan 2008) | 3 lines

Updated the set_update() dummy method of the Common_functions base class to the new relax design.
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r4279 | bugman | 2008-01-03 17:22:13 +0100 (Thu, 03 Jan 2008) | 3 lines

Updated the set_update() method of the Model_free class to the new relax design.
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r4280 | bugman | 2008-01-03 17:28:19 +0100 (Thu, 03 Jan 2008) | 3 lines

Updated the docstrings for epydoc for the set() and set_update() class methods recently updated.
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r4281 | bugman | 2008-01-03 17:39:12 +0100 (Thu, 03 Jan 2008) | 5 lines

Bug fix in the model-free parameter setting code (in the default_value() method).

The parameter checking should have looked for lower case parameter names!
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r4282 | bugman | 2008-01-03 17:43:17 +0100 (Thu, 03 Jan 2008) | 3 lines

Updated the model-free code to use the default CSA and bond length vals in phyical_constants.py.
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r4283 | bugman | 2008-01-03 17:48:10 +0100 (Thu, 03 Jan 2008) | 5 lines

Bug fix for all the spin specific unit tests of the value setting function.

The spin_id should have started with the atom identifier '@' rather than the residue identifier ':'.
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r4284 | bugman | 2008-01-03 17:49:51 +0100 (Thu, 03 Jan 2008) | 5 lines

Another bug fix for the spin specific unit tests of the value setting function.

No spin data was being set up for the reduced spectral density mapping parameter tests.
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r4285 | bugman | 2008-01-03 18:00:02 +0100 (Thu, 03 Jan 2008) | 3 lines

Updated the set() method of the Jw_mapping class to the new relax design.
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r4286 | bugman | 2008-01-03 18:03:57 +0100 (Thu, 03 Jan 2008) | 6 lines

Set __docformat__ for all model-free docstrings which are appended to the user function docstrings.

The line added at the end of the docstring was:
__docformat__ = "plaintext"
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r4287 | bugman | 2008-01-03 18:04:59 +0100 (Thu, 03 Jan 2008) | 6 lines

Set __docformat__ for all jw mapping docstrings which are appended to the user function docstrings.

The line added at the end of the docstring was:
__docformat__ = "plaintext"
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r4288 | bugman | 2008-01-03 18:06:21 +0100 (Thu, 03 Jan 2008) | 3 lines

Slackened the testing of floats in a parameter setting unit test.
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r4289 | bugman | 2008-01-03 18:08:36 +0100 (Thu, 03 Jan 2008) | 5 lines

Bug fix in the specific_fns.jw_mapping.default_value() function.

The CSA parameter check should have been for lower case.
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r4290 | bugman | 2008-01-03 18:09:25 +0100 (Thu, 03 Jan 2008) | 3 lines

Slackened the testing of floats in a parameter setting unit test.
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r4291 | bugman | 2008-01-03 18:19:58 +0100 (Thu, 03 Jan 2008) | 6 lines

Bug fix for the jw mapping parameter setting function specific_fns.jw_mapping.set().

The J(w) parameters do not have default values and now a new RelaxError, RelaxParamSetError, is
raised if these params are set. All the relevent unit tests have been updated for this change.
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Bug fix for the jw mapping parameter setting function specific_fns.jw_mapping.set().

The J(w) parameters do not have default values and now a new RelaxError, RelaxParamSetError, is
raised if these params are set. All the relevent unit tests have been updated for this change.

Slackened the testing of floats in a parameter setting unit test.