relax SVN archive

Added a unit test for the proper operation of the residue loop when no data pipe is present.

Added the generic_fns.pipes.test() function to the molecule, residue, and spin loop functions.

Created the test() function for testing the existence of the current or given data pipe.

Added a unit test for the proper operation of the residue loop when no data is present.

Added a unit test for the proper operation of the molecule loop when no data is present.

Added a unit test for the proper operation of the spin loop when no data is present.

Added a unit test for the generic_fns.selection.count_spins() function, for when there is no data.

Added a unit test for the generic_fns.selection.count_spins() function.

Merged revisions 3863-3869 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r3863 | bugman | 2007-11-23 17:08:49 +0100 (Fri, 23 Nov 2007) | 6 lines

Split the write() function in half.

The two new functions are write() and write_body(). The write() function calls write_body(). This
write_body() is designed to be used by the display() function.
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r3864 | bugman | 2007-11-23 17:11:39 +0100 (Fri, 23 Nov 2007) | 3 lines

Implemented the display() function.
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r3865 | bugman | 2007-11-23 17:13:41 +0100 (Fri, 23 Nov 2007) | 3 lines

Implemented all the arg unit tests for the sequence.display() user function.
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r3866 | bugman | 2007-11-23 17:15:00 +0100 (Fri, 23 Nov 2007) | 3 lines

Bug fix for all the arg unit tests for the sequence.display() user function.
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r3867 | bugman | 2007-11-23 17:17:10 +0100 (Fri, 23 Nov 2007) | 3 lines

Implemented a unit test to test the display of an amino acid sequence.
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r3868 | bugman | 2007-11-23 17:27:40 +0100 (Fri, 23 Nov 2007) | 3 lines

Implemented the sequence.display() user function.
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r3869 | bugman | 2007-11-23 17:39:55 +0100 (Fri, 23 Nov 2007) | 3 lines

A few improvements to the unit test for the display of an amino acid sequence.
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Merged revisions 3840-3862 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r3840 | bugman | 2007-11-23 13:52:34 +0100 (Fri, 23 Nov 2007) | 3 lines

Fixed the system test for loading the of amino acid sequence data.
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r3841 | bugman | 2007-11-23 13:53:55 +0100 (Fri, 23 Nov 2007) | 3 lines

Updated the system test of loading a sequence from a PDB file to use the new relax design.
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r3842 | bugman | 2007-11-23 13:55:04 +0100 (Fri, 23 Nov 2007) | 3 lines

Updated the copyright notice.
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r3843 | bugman | 2007-11-23 15:16:25 +0100 (Fri, 23 Nov 2007) | 3 lines

Updated all the system tests to use the new relax design!
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r3844 | bugman | 2007-11-23 15:28:27 +0100 (Fri, 23 Nov 2007) | 3 lines

Removed the now useless methods of the generic_fns.sequence.Sequence class.
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r3845 | bugman | 2007-11-23 15:29:47 +0100 (Fri, 23 Nov 2007) | 3 lines

Converted the diplay() class method to a module function.
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r3846 | bugman | 2007-11-23 15:31:22 +0100 (Fri, 23 Nov 2007) | 3 lines

Converted the write() class method to a module function.
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r3847 | bugman | 2007-11-23 15:32:23 +0100 (Fri, 23 Nov 2007) | 3 lines

Converted the load_PDB_sequence() class method to a module function.
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r3848 | bugman | 2007-11-23 15:33:37 +0100 (Fri, 23 Nov 2007) | 3 lines

Removed the import of the now non-existant Sequence class.
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r3849 | bugman | 2007-11-23 15:38:54 +0100 (Fri, 23 Nov 2007) | 3 lines

The display() function now works (although not fully).
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r3850 | bugman | 2007-11-23 15:41:40 +0100 (Fri, 23 Nov 2007) | 3 lines

Fixes for the write() function.
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r3851 | bugman | 2007-11-23 15:42:34 +0100 (Fri, 23 Nov 2007) | 3 lines

Added the import for the count_spins() function.
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r3852 | bugman | 2007-11-23 15:48:05 +0100 (Fri, 23 Nov 2007) | 3 lines

Wrote the count_spins() function.
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r3853 | bugman | 2007-11-23 15:50:07 +0100 (Fri, 23 Nov 2007) | 3 lines

Added the missing import of the open_write_file() function.
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r3854 | bugman | 2007-11-23 15:50:48 +0100 (Fri, 23 Nov 2007) | 3 lines

Added the missing import of the spin_loop() function.
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r3855 | bugman | 2007-11-23 16:04:22 +0100 (Fri, 23 Nov 2007) | 3 lines

Fix for the unit test for writing an amino acid sequence.
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r3856 | bugman | 2007-11-23 16:04:44 +0100 (Fri, 23 Nov 2007) | 3 lines

A fix for the write() function.
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r3857 | bugman | 2007-11-23 16:06:30 +0100 (Fri, 23 Nov 2007) | 3 lines

Another fix for the unit test for writing an amino acid sequence.
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r3858 | bugman | 2007-11-23 16:19:15 +0100 (Fri, 23 Nov 2007) | 3 lines

And another fix for the unit test for writing an amino acid sequence.
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r3859 | bugman | 2007-11-23 16:29:32 +0100 (Fri, 23 Nov 2007) | 3 lines

Big improvements to the write() function.
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r3860 | bugman | 2007-11-23 16:30:11 +0100 (Fri, 23 Nov 2007) | 5 lines

Final fix for the unit test for writing an amino acid sequence.

The md5sum has been added to the test.
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r3861 | bugman | 2007-11-23 16:32:14 +0100 (Fri, 23 Nov 2007) | 3 lines

Removal of debugging code from the write() function and an update to the md5sum in its unit test.
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r3862 | bugman | 2007-11-23 16:38:19 +0100 (Fri, 23 Nov 2007) | 3 lines

Updated the docstring of the write() function.
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