relax SVN archive

Added a unit test for the generic_fns.selection.count_spins() function.

Merged revisions 3863-3869 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

........
r3863 | bugman | 2007-11-23 17:08:49 +0100 (Fri, 23 Nov 2007) | 6 lines

Split the write() function in half.

The two new functions are write() and write_body(). The write() function calls write_body(). This
write_body() is designed to be used by the display() function.
........
r3864 | bugman | 2007-11-23 17:11:39 +0100 (Fri, 23 Nov 2007) | 3 lines

Implemented the display() function.
........
r3865 | bugman | 2007-11-23 17:13:41 +0100 (Fri, 23 Nov 2007) | 3 lines

Implemented all the arg unit tests for the sequence.display() user function.
........
r3866 | bugman | 2007-11-23 17:15:00 +0100 (Fri, 23 Nov 2007) | 3 lines

Bug fix for all the arg unit tests for the sequence.display() user function.
........
r3867 | bugman | 2007-11-23 17:17:10 +0100 (Fri, 23 Nov 2007) | 3 lines

Implemented a unit test to test the display of an amino acid sequence.
........
r3868 | bugman | 2007-11-23 17:27:40 +0100 (Fri, 23 Nov 2007) | 3 lines

Implemented the sequence.display() user function.
........
r3869 | bugman | 2007-11-23 17:39:55 +0100 (Fri, 23 Nov 2007) | 3 lines

A few improvements to the unit test for the display of an amino acid sequence.
........

Merged revisions 3840-3862 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

........
r3840 | bugman | 2007-11-23 13:52:34 +0100 (Fri, 23 Nov 2007) | 3 lines

Fixed the system test for loading the of amino acid sequence data.
........
r3841 | bugman | 2007-11-23 13:53:55 +0100 (Fri, 23 Nov 2007) | 3 lines

Updated the system test of loading a sequence from a PDB file to use the new relax design.
........
r3842 | bugman | 2007-11-23 13:55:04 +0100 (Fri, 23 Nov 2007) | 3 lines

Updated the copyright notice.
........
r3843 | bugman | 2007-11-23 15:16:25 +0100 (Fri, 23 Nov 2007) | 3 lines

Updated all the system tests to use the new relax design!
........
r3844 | bugman | 2007-11-23 15:28:27 +0100 (Fri, 23 Nov 2007) | 3 lines

Removed the now useless methods of the generic_fns.sequence.Sequence class.
........
r3845 | bugman | 2007-11-23 15:29:47 +0100 (Fri, 23 Nov 2007) | 3 lines

Converted the diplay() class method to a module function.
........
r3846 | bugman | 2007-11-23 15:31:22 +0100 (Fri, 23 Nov 2007) | 3 lines

Converted the write() class method to a module function.
........
r3847 | bugman | 2007-11-23 15:32:23 +0100 (Fri, 23 Nov 2007) | 3 lines

Converted the load_PDB_sequence() class method to a module function.
........
r3848 | bugman | 2007-11-23 15:33:37 +0100 (Fri, 23 Nov 2007) | 3 lines

Removed the import of the now non-existant Sequence class.
........
r3849 | bugman | 2007-11-23 15:38:54 +0100 (Fri, 23 Nov 2007) | 3 lines

The display() function now works (although not fully).
........
r3850 | bugman | 2007-11-23 15:41:40 +0100 (Fri, 23 Nov 2007) | 3 lines

Fixes for the write() function.
........
r3851 | bugman | 2007-11-23 15:42:34 +0100 (Fri, 23 Nov 2007) | 3 lines

Added the import for the count_spins() function.
........
r3852 | bugman | 2007-11-23 15:48:05 +0100 (Fri, 23 Nov 2007) | 3 lines

Wrote the count_spins() function.
........
r3853 | bugman | 2007-11-23 15:50:07 +0100 (Fri, 23 Nov 2007) | 3 lines

Added the missing import of the open_write_file() function.
........
r3854 | bugman | 2007-11-23 15:50:48 +0100 (Fri, 23 Nov 2007) | 3 lines

Added the missing import of the spin_loop() function.
........
r3855 | bugman | 2007-11-23 16:04:22 +0100 (Fri, 23 Nov 2007) | 3 lines

Fix for the unit test for writing an amino acid sequence.
........
r3856 | bugman | 2007-11-23 16:04:44 +0100 (Fri, 23 Nov 2007) | 3 lines

A fix for the write() function.
........
r3857 | bugman | 2007-11-23 16:06:30 +0100 (Fri, 23 Nov 2007) | 3 lines

Another fix for the unit test for writing an amino acid sequence.
........
r3858 | bugman | 2007-11-23 16:19:15 +0100 (Fri, 23 Nov 2007) | 3 lines

And another fix for the unit test for writing an amino acid sequence.
........
r3859 | bugman | 2007-11-23 16:29:32 +0100 (Fri, 23 Nov 2007) | 3 lines

Big improvements to the write() function.
........
r3860 | bugman | 2007-11-23 16:30:11 +0100 (Fri, 23 Nov 2007) | 5 lines

Final fix for the unit test for writing an amino acid sequence.

The md5sum has been added to the test.
........
r3861 | bugman | 2007-11-23 16:32:14 +0100 (Fri, 23 Nov 2007) | 3 lines

Removal of debugging code from the write() function and an update to the md5sum in its unit test.
........
r3862 | bugman | 2007-11-23 16:38:19 +0100 (Fri, 23 Nov 2007) | 3 lines

Updated the docstring of the write() function.
........

A few improvements to the unit test for the display of an amino acid sequence.

Implemented the sequence.display() user function.

Implemented a unit test to test the display of an amino acid sequence.

Bug fix for all the arg unit tests for the sequence.display() user function.

Implemented all the arg unit tests for the sequence.display() user function.

Implemented the display() function.

Split the write() function in half.

The two new functions are write() and write_body(). The write() function calls write_body(). This
write_body() is designed to be used by the display() function.