relax SVN archive

svn+ssh://bugman@.../svn/relax/1.3

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r3809 | bugman | 2007-11-22 11:24:17 +0100 (Thu, 22 Nov 2007) | 5 lines

Removed the return_data_types() function and converted data_types into a permanent module constant.

This is in preparation to add file descriptors to the list.
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r3810 | bugman | 2007-11-22 11:26:04 +0100 (Thu, 22 Nov 2007) | 3 lines

Added the tmpfile() file descriptor to the 'DATA_TYPES' array.
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r3811 | bugman | 2007-11-22 11:27:39 +0100 (Thu, 22 Nov 2007) | 3 lines

Alphabetically sorted the initialisation of DATA_TYPES to bring some order to the chaos.
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r3812 | bugman | 2007-11-22 11:31:00 +0100 (Thu, 22 Nov 2007) | 3 lines

Fixed all user function arg unit tests to use the new DATA_TYPES module array.
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r3813 | bugman | 2007-11-22 11:37:47 +0100 (Thu, 22 Nov 2007) | 3 lines

Updated the sequence.write() user function for the new relax design.
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r3814 | bugman | 2007-11-22 11:40:59 +0100 (Thu, 22 Nov 2007) | 3 lines

Added unit tests for all arguments of the sequence.write() user function.
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r3815 | bugman | 2007-11-22 12:11:30 +0100 (Thu, 22 Nov 2007) | 3 lines

Wrote a unit test for the writing of an amino acid sequence to file.
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r3816 | bugman | 2007-11-22 12:21:41 +0100 (Thu, 22 Nov 2007) | 3 lines

Added a new RelaxError for invalid sequence data.
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r3817 | bugman | 2007-11-22 12:22:21 +0100 (Thu, 22 Nov 2007) | 3 lines

Small fix for RelaxInvalidSeqError.
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r3818 | bugman | 2007-11-22 12:36:59 +0100 (Thu, 22 Nov 2007) | 3 lines

Started to implement the read, sequence_exists, and valid_sequence functions.
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r3819 | bugman | 2007-11-22 12:39:37 +0100 (Thu, 22 Nov 2007) | 3 lines

Updated the extract_data() for the new relax design (converted from a class method to a function).
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r3820 | bugman | 2007-11-22 17:16:52 +0100 (Thu, 22 Nov 2007) | 3 lines

Fixed the path in the unit test for reading a protein sequence.
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r3821 | bugman | 2007-11-22 17:18:45 +0100 (Thu, 22 Nov 2007) | 3 lines

Added the missing import of relax_io.strip.
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r3822 | bugman | 2007-11-22 17:19:25 +0100 (Thu, 22 Nov 2007) | 3 lines

Converted the strip class method to a module function.
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r3823 | bugman | 2007-11-22 17:25:44 +0100 (Thu, 22 Nov 2007) | 3 lines

Fix for the generic_fns.sequence.read() function.
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r3824 | bugman | 2007-11-22 17:40:25 +0100 (Thu, 22 Nov 2007) | 2 lines

Renamed valid_sequence() to validate_sequence() and called it from within the read() fn.
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r3825 | bugman | 2007-11-22 17:49:25 +0100 (Thu, 22 Nov 2007) | 3 lines

Completed the generic_fns.sequence.read() function.
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r3826 | bugman | 2007-11-22 17:50:39 +0100 (Thu, 22 Nov 2007) | 3 lines

Bug fix for the generic_fns.sequence.validate_sequence() function.
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r3827 | bugman | 2007-11-22 17:52:41 +0100 (Thu, 22 Nov 2007) | 5 lines

Another bug fix for the generic_fns.sequence.validate_sequence() function.

The mol, res, and spin column numbers are now passed into it.
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r3828 | bugman | 2007-11-22 17:55:19 +0100 (Thu, 22 Nov 2007) | 3 lines

Updated the docstring of the generic_fns.sequence.validate_sequence() function.
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r3829 | bugman | 2007-11-22 18:01:07 +0100 (Thu, 22 Nov 2007) | 3 lines

Updated the docstring of generic_fns.sequence.read(). This is now in the epydoc format.
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r3830 | bugman | 2007-11-22 18:02:47 +0100 (Thu, 22 Nov 2007) | 3 lines

Fix for the unit test of reading of the amino acid sequence out of a protein NOE data file.
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r3831 | bugman | 2007-11-22 18:09:57 +0100 (Thu, 22 Nov 2007) | 5 lines

Bug fix for the generic_fns.sequence.read() function, it's now functional!

The empty first containers are now taken into account.
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r3832 | bugman | 2007-11-22 18:11:35 +0100 (Thu, 22 Nov 2007) | 3 lines

Actually the read() function was not functional!!! So this is another fix.
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r3833 | bugman | 2007-11-22 18:14:04 +0100 (Thu, 22 Nov 2007) | 3 lines

Final fix for the unit test of reading of the amino acid sequence out of a protein NOE data file.
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