relax SVN archive

relax version 1.2.11.

This is a major bugfix release. It covers r2980 to r3358 of the 1.2 line.

Manually ported r3358 from the 1.2 line - the fix to bug #10022 (https://gna.org/bugs/?10022).

The command used was:
svn merge -r3357:3358 svn+ssh://bugman@.../svn/relax/1.2

.....
r3358 | bugman | 2007-10-21 17:59:42 +0200 (Sun, 21 Oct 2007) | 9 lines
Changed paths:
M /1.2/sample_scripts/full_analysis.py

Doug's patch for fixing bug #10022 (https://gna.org/bugs/?10022).

The patch by Douglas Kojetin (https://gna.org/users/dkojetin) labelled as 'patch2' and attached to
the bug report has been applied without modification.

This change fixes the convergence test in the 'full_analysis.py' script which fails when one residue
has the model None associated with it. These situations are now caught and skipped.
.....

Doug's patch for fixing bug #10022 (https://gna.org/bugs/?10022).

The patch by Douglas Kojetin (https://gna.org/users/dkojetin) labelled as 'patch2' and attached to
the bug report has been applied without modification.

This change fixes the convergence test in the 'full_analysis.py' script which fails when one residue
has the model None associated with it. These situations are now caught and skipped.

Blocked revisions 3355 via svnmerge

........
r3355 | bugman | 2007-08-30 10:41:32 +0200 (Thu, 30 Aug 2007) | 10 lines

Fix for bug #9892 (https://gna.org/bugs/?9892).

This bug was reported by Douglas Kojetin <douglas dot kojetin at gmail dot com>, and was first
discussed in the post https://mail.gna.org/public/relax-users/2007-08/msg00008.html (Message-id:
<1E05882B-96B3-4875-B11B-0A6FEF423937@...>).

The fix was to simply test for the presence of the data structures. If these spin system specific
structures - 'model' and 'params' - were missing, then the bug will arise.
........

Hand ported r3355 from the 1.3 line.

.....
Fix for bug #9892 (https://gna.org/bugs/?9892).

This bug was reported by Douglas Kojetin <douglas dot kojetin at gmail dot com>, and was first
discussed in the post https://mail.gna.org/public/relax-users/2007-08/msg00008.html (Message-id:
<1E05882B-96B3-4875-B11B-0A6FEF423937@...>).

The fix was to simply test for the presence of the data structures. If these spin system specific
structures - 'model' and 'params' - were missing, then the bug will arise.
.....

Fix for bug #9892 (https://gna.org/bugs/?9892).

This bug was reported by Douglas Kojetin <douglas dot kojetin at gmail dot com>, and was first
discussed in the post https://mail.gna.org/public/relax-users/2007-08/msg00008.html (Message-id:
<1E05882B-96B3-4875-B11B-0A6FEF423937@...>).

The fix was to simply test for the presence of the data structures. If these spin system specific
structures - 'model' and 'params' - were missing, then the bug will arise.

Application of Sebastien Morin's patch to convert all default CSA values to -172 ppm.

For the patch, see the post at https://mail.gna.org/public/relax-devel/2007-07/msg00060.html.

The patch 'patch__default_csa__l1.2_r3351' makes uniform the use of the CSA value (now -172 ppm
everywhere) and fixes the test-suite (in jw_mapping) to account for this change.

Blocked revisions 3352 via svnmerge

........
r3352 | bugman | 2007-08-06 13:28:05 +0200 (Mon, 06 Aug 2007) | 9 lines

Application of Sebastien Morin's patch creating the N15_CSA and NH_BOND_LENGTH constants.

For the patch, see the post at https://mail.gna.org/public/relax-devel/2007-07/msg00060.html.

The patch 'patch__default_csa_r__l1.3_r3351' makes uniform the use of the CSA value (now -172 ppm
everywhere) and fixes the test-suite (in jw_mapping) to account for this change. It also adds two
constants for the CSA and NH bond length default values.
........

Application of Sebastien Morin's patch creating the N15_CSA and NH_BOND_LENGTH constants.

For the patch, see the post at https://mail.gna.org/public/relax-devel/2007-07/msg00060.html.

The patch 'patch__default_csa_r__l1.3_r3351' makes uniform the use of the CSA value (now -172 ppm
everywhere) and fixes the test-suite (in jw_mapping) to account for this change. It also adds two
constants for the CSA and NH bond length default values.

Application of Seb's patch 'patch_consistency_tests__l1.2_r3342-1-b'.

The patch is located at https://mail.gna.org/public/relax-devel/2007-07/msg00059.html.

The patch 'patch_consistency_tests__l1.2_r3342-1-b' adds the variables 'orientation' and 'tc' to the
relax results files (by adding them in the file 'specific_fns/consistency_tests.py').