relax SVN archive

more documentation strings (completed if buggy for multi.processor)

minor improvements and much documentation of the Processor class

Bug fix.

The setting up of Monte Carlo simulations was failing because of the existance of the empty
parameter vector []. This situation occurs after model selection when the residue is deselected
(after the reading of a model-free results file).

Bug fix.

The reading of model-free results files was failing for residues with the parameters vector of None
(as well as the parameter set set to None and the model-free equation set to None). This situation
occurs after model selection when the residue is deselected.

Bug fix for the full_analysis.py script.

The list of model-free models needed to be placed into 'self.runs' for model selection to work.

Renamed "Kay's paradigm" to "the diffusion seeded paradigm".

Kay's paradigm was accidentally mislabelled. This paradigm should have been stated to be the
diffusion seeded paradigm using the T1/T2 ratio to initially estimate the diffusion tensor!

Manually ported the relevent part of r3288 (the fix to bug #9101 (https://gna.org/bugs/?9101)).

The changes to errors.py and specific_fns/model_free.py were not ported.

.....
r3288 | bugman | 2007-05-08 23:48:05 +0200 (Tue, 08 May 2007) | 6 lines
Changed paths:
M /1.2/errors.py
M /1.2/specific_fns/model_free.py
M /1.2/specific_fns/relax_data.py

Fix for bug #9101 (https://gna.org/bugs/?9101).

The relax_data.read() user function was failing when the data or error column contained the text
'None' which is the default output for deselected spin systems in the exponential curve fitting
component of relax. This is now fixed.
.....

Fixed the reversion of the many changes to 'specific_fns/model_free.py' and 'errors.py'.

This occurred in the last revision.

Fix for bug #9101 (https://gna.org/bugs/?9101).

The relax_data.read() user function was failing when the data or error column contained the text
'None' which is the default output for deselected spin systems in the exponential curve fitting
component of relax. This is now fixed.

Improvements to the 'full_analysis.py' sample script.

The script's documentation has been shifted from the __init__() method docstring to the module
docstring.

All of the options which need to be modified by the user have been shifted to the top of the script
as global variables. This means that the user doesn't even need to look at the complex code to
operate the script.