relax SVN archive

minor improvements and much documentation of the Processor class

Bug fix.

The setting up of Monte Carlo simulations was failing because of the existance of the empty
parameter vector []. This situation occurs after model selection when the residue is deselected
(after the reading of a model-free results file).

Bug fix.

The reading of model-free results files was failing for residues with the parameters vector of None
(as well as the parameter set set to None and the model-free equation set to None). This situation
occurs after model selection when the residue is deselected.

Bug fix for the full_analysis.py script.

The list of model-free models needed to be placed into 'self.runs' for model selection to work.

Renamed "Kay's paradigm" to "the diffusion seeded paradigm".

Kay's paradigm was accidentally mislabelled. This paradigm should have been stated to be the
diffusion seeded paradigm using the T1/T2 ratio to initially estimate the diffusion tensor!

Manually ported the relevent part of r3288 (the fix to bug #9101 (https://gna.org/bugs/?9101)).

The changes to errors.py and specific_fns/model_free.py were not ported.

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r3288 | bugman | 2007-05-08 23:48:05 +0200 (Tue, 08 May 2007) | 6 lines
Changed paths:
M /1.2/errors.py
M /1.2/specific_fns/model_free.py
M /1.2/specific_fns/relax_data.py

Fix for bug #9101 (https://gna.org/bugs/?9101).

The relax_data.read() user function was failing when the data or error column contained the text
'None' which is the default output for deselected spin systems in the exponential curve fitting
component of relax. This is now fixed.
.....

Fixed the reversion of the many changes to 'specific_fns/model_free.py' and 'errors.py'.

This occurred in the last revision.

Fix for bug #9101 (https://gna.org/bugs/?9101).

The relax_data.read() user function was failing when the data or error column contained the text
'None' which is the default output for deselected spin systems in the exponential curve fitting
component of relax. This is now fixed.

Improvements to the 'full_analysis.py' sample script.

The script's documentation has been shifted from the __init__() method docstring to the module
docstring.

All of the options which need to be modified by the user have been shifted to the top of the script
as global variables. This means that the user doesn't even need to look at the complex code to
operate the script.

Hand ported r3285 from the 1.2 line, the fix for bug #8953 (https://gna.org/bugs/?8953).

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Fix for bug #8953 (https://gna.org/bugs/?8953).

The bug was introduced by a fix to the model-free results writing function. In relax versions 1.2.9
and below, no data about a residue was being stored in the results file if it was deselected. This
behaviour undesirable as a spin system could be deselected temporarily and later on reselected. If
this process is deliberately interrupted by using 'results.write()' followed by 'results.read()' to
resume, then there will be data loss.

The fix was simple: check for the presence of the 'data.num_ri' data structure.
.....