relax SVN archive

svn+ssh://bugman@.../svn/relax/branches/frame_order_cleanup

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r23713 | bugman | 2014-06-06 18:09:59 +0200 (Fri, 06 Jun 2014) | 6 lines

Added the full optimisation results for the small angle rotor CaM frame order test data.

This is from the new frame_order.py optimisation script and the results demonstrate the stability of
the rotor model, even when the rotor is as small as 1 degree.
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r23714 | bugman | 2014-06-06 18:11:08 +0200 (Fri, 06 Jun 2014) | 5 lines

Removed some files from the 2nd rotor CaM frame order test data directory.

These are now present as *.gz files, so the uncompressed files can go.
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r23717 | bugman | 2014-06-06 18:26:14 +0200 (Fri, 06 Jun 2014) | 5 lines

Removed a PDB file from the 2nd rotor CaM frame order test data directory.

This is now present as a *.gz file, so the uncompressed file can go.
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r23771 | bugman | 2014-06-10 09:15:53 +0200 (Tue, 10 Jun 2014) | 6 lines

Fix for the free rotor PDB representation created by the frame_order.pdb_model user function.

The simulation axes were being incorrectly generated from the theta and phi angles, which no longer
exist as they have been replaced by the alpha angle.
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r23772 | bugman | 2014-06-10 09:27:41 +0200 (Tue, 10 Jun 2014) | 5 lines

Added the full optimisation results for the free rotor pseudo-ellipse frame order model.

This is for the CaM test data using the new frame_order.py optimisation script.
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r23773 | bugman | 2014-06-10 09:29:19 +0200 (Tue, 10 Jun 2014) | 5 lines

Added the full optimisation results for the rotor frame order model.

This is for the 2-site CaM test data using the new frame_order.py optimisation script.
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r23778 | bugman | 2014-06-10 09:48:07 +0200 (Tue, 10 Jun 2014) | 6 lines

The CaM frame order data generation base script now uses lib.compat.norm().

This is to allow the test suite to pass on systems with old numpy versions whereby the
numpy.linalg.norm() function does not support the new axis argument.
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r23783 | bugman | 2014-06-10 10:21:27 +0200 (Tue, 10 Jun 2014) | 7 lines

Modified the pymol.cone_pdb and pymol.frame_order user functions to use PyMOL IDs.

The PyMOL IDs are used to select individual objects in PyMOL rather than all objects so that the
subsequent PyMOL commands will only be applied to that object. This allows for multiple objects to
be handled simultaneously.
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