relax SVN archive

svn+ssh://bugman@.../svn/relax/branches/frame_order_cleanup

........
r23199 | bugman | 2014-05-16 14:12:07 +0200 (Fri, 16 May 2014) | 7 lines

Deletion of half of the frame order target functions.

All of the target functions using Scipy quadratic integration (which cause a frame order analysis to
take over 1,000,000 years to complete) have been deleted. The quasi-random target functions that
replace these have been renamed to remove the '_qrint' ending.
........
r23200 | bugman | 2014-05-16 14:14:48 +0200 (Fri, 16 May 2014) | 5 lines

Import cleanup for the frame order target functions.

The Scipy quadratic integration functions for the PCS have been removed.
........
r23201 | bugman | 2014-05-16 14:20:39 +0200 (Fri, 16 May 2014) | 3 lines

Alphabetical ordering of functions in the lib.frame_order.pseudo_ellipse module.
........
r23202 | bugman | 2014-05-16 14:31:11 +0200 (Fri, 16 May 2014) | 6 lines

Deletion of all of the Scipy quadratic integration functions for the PCS in the relax library.

These are no longer used, as they are far too slow. The quasi-random functions have long replaced
these.
........
r23203 | bugman | 2014-05-16 14:36:40 +0200 (Fri, 16 May 2014) | 5 lines

Eliminated all of the 'line' frame order models, as they are not implemented yet.

This is just frontend code - the backend does not exist.
........
r23204 | bugman | 2014-05-16 15:39:36 +0200 (Fri, 16 May 2014) | 5 lines

Updated the isotropic cone CaM frame order test model optimisation script.

Due to all of the changes in the frame order analysis, the old script was no longer functional.
........
r23205 | bugman | 2014-05-16 15:55:40 +0200 (Fri, 16 May 2014) | 9 lines

Created a script for the CaM frame order test models for finding the average domain position.

As the rotation about a fixed pivot has been eliminated, the shift from 1J7P_1st_NH_rot.pdb to
1J7P_1st_NH.pdb has to be converted into a translation and rotation about the CoM. This script will
be used to replace the pivot rotation Euler angles with the translation vector and CoM rotation
Euler angles. However the structure.superimpose user function will need to be modified to handle
both the standard centroid superimposition as well as a CoM superimposition.
........