relax SVN archive

Merged revisions 23198 via svnmerge from
svn+ssh://bugman@.../svn/relax/branches/frame_order_cleanup

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r23198 | bugman | 2014-05-16 13:44:31 +0200 (Fri, 16 May 2014) | 8 lines

Clean up of the frame order target function code.

This matches the previous changes (r23197), the deletion of the frame_order.average_position user
function. The changes include the removal of the translation optimisation flag as this is now
always performed, and the removal of the flag which causes the average domain rotation pivot point
to match the motional pivot point as these are now permanently decoupled.
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Merged revisions 23197 via svnmerge from
svn+ssh://bugman@.../svn/relax/branches/frame_order_cleanup

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r23197 | bugman | 2014-05-16 10:45:40 +0200 (Fri, 16 May 2014) | 19 lines

Deletion of the frame_order.average_position user function and all of the associated backend code.

This user function allowed the user to specify five different types of displacement to the average
moving domain position:

- A pure rotation, with no translation, about the pivot of the motion in the system.
- A rotation about the pivot of the motion of the system together with a translation.
- A pure translation with no rotation.
- A rotation about the centre of mass of the moving domain with no translation.
- A rotation about the centre of mass of the moving domain together with a translation.

Now the last option will be the default and only option. This option is equivalent to the standard
superimposition algorithm (the Kabsch algorithm) to a hypothetical structure at the real average
position.

The other four are due to the history of the development of the theory. These limit the usefulness
of the theory and will only cause confusion.
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Initialized merge tracking via "svnmerge" with revisions "1-23195" from
svn+ssh://bugman@.../svn/relax/branches/frame_order_cleanup

Indentation fix for allowing the API documentation to be properly compiled.

Merged revisions 27904,27906-27907,27910 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r27904 | bugman | 2015-09-30 12:08:12 +0200 (Wed, 30 Sep 2015) | 6 lines

Backported the relax 3.3.9 CHANGES file changes to trunk.

The command used was:
svn merge -r27902:27903 svn+ssh://bugman@.../svn/relax/tags/3.3.9 .
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r27906 | bugman | 2015-09-30 14:42:40 +0200 (Wed, 30 Sep 2015) | 6 lines

Added a patch file for fixing Epydoc version 3.0.1.

This is needed to allow the dot graph files names to be unique (by no longer truncating to 30
characters), and to allow epydoc to handle newer Graphvis versions.
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r27907 | bugman | 2015-09-30 14:43:40 +0200 (Wed, 30 Sep 2015) | 6 lines

Improvements for the release checklist document.

The backporting of the CHANGES file to trunk is now more obvious, and instructions for fixing Epydoc
have been added.
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r27910 | bugman | 2015-10-01 14:55:29 +0200 (Thu, 01 Oct 2015) | 3 lines

Clean up of some of the release instructions (for using vim).
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Clean up of some of the release instructions (for using vim).

Updated the http://www.nmr-relax.com/download.html webpage for the relax 3.3.9 release.

Updated the relax API documentation at http://www.nmr-relax.com/api/3.3/ to version 3.3.9.

Improvements for the release checklist document.

The backporting of the CHANGES file to trunk is now more obvious, and instructions for fixing Epydoc
have been added.

Added a patch file for fixing Epydoc version 3.0.1.

This is needed to allow the dot graph files names to be unique (by no longer truncating to 30
characters), and to allow epydoc to handle newer Graphvis versions.