relax SVN archive

Trailing whitespace removal in the full_analysis.py frame order sample script.

The 'scons clean' target now removes all LaTeX *.aux files.

The docs/latex/frame_order/ directory is now also being checked for *.aux files.

Added a section to the end of the frame order chapter about the long computation times.

Editing of the data analysis section of the frame order chapter of the manual.

A PCS structural error figure has been added, all the text improved, and the scripts made to match
those in sample_scripts/frame_order/.

Added a 'Data analysis' section to the frame order chapter of the manual.

This includes the N-state and frame order analysis scripts required to perform a full analysis.

Added an introduction for the frame order chapter of the manual.

Added the frame order sample scripts used in the CaM-IQ analysis.

Cross-referencing fix.

Shifted the frame order model derivations into their own 'Advanced topics' chapter.

Moved the frame_order_theory.tex LaTeX file into the frame_order directory.