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Huge speed up for the Monte Carlo simulations in the N-state model analyses.

This speed up is also for Bootstrap simulations and the frame order analysis. The change affects
the monte_carlo.initial_values user function. The alignment tensor _update_object() method was very
inefficient when updating the Monte Carlo simulation data structures. For each simulation, each of
the alignment tensor data structures were being updated for all simulations. Now only the current
simulations is being updated. This speeds up the user function by many orders of magnitude.

bugman 2015-06-25

changed /trunk/data_store/align_tensor.py
/trunk/data_store/align_tensor.py Diff Switch to side-by-side view
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