relax SVN archive

Modified the spectrum.read_intensities user function backend to be more robust.

This affects the generic formatted peak lists, via the lib.spectrum.peak_list.intensity_generic()
function. The peak list reading will now continue reading the file after corrupted lines have been
encountered.

Added the raise_flag argument to the lib.sequence.read_spin_data() function.

This is to allow the missing data RelaxError to be deactivated.

Fix for the lib.sequence.check_sequence checking object.

Although rarely used, the check for the spin number was incorrect and half of the checks were
instead for the residue number. This is a classic copy and paste error where the residue name and
number checks were copied but not completely converted to spin name and numbers.

Merged revisions 27797 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r27797 | bugman | 2015-03-10 09:50:16 +0100 (Tue, 10 Mar 2015) | 6 lines

Fix for bug #23372 (https://gna.org/bugs/?23372), the sequence.read failure with CSV files.

The problem was that the sep argument was not being passed all the way to the backend
lib.io.extract_data() function.
........

Merged revisions 27797 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r27797 | bugman | 2015-03-10 09:50:16 +0100 (Tue, 10 Mar 2015) | 6 lines

Fix for bug #23372 (https://gna.org/bugs/?23372), the sequence.read failure with CSV files.

The problem was that the sep argument was not being passed all the way to the backend
lib.io.extract_data() function.
........

Fix for bug #23372 (https://gna.org/bugs/?23372), the sequence.read failure with CSV files.

The problem was that the sep argument was not being passed all the way to the backend
lib.io.extract_data() function.

Merged revisions 27793-27794 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r27793 | bugman | 2015-03-10 09:47:19 +0100 (Tue, 10 Mar 2015) | 11 lines

Converted the lib.sequence.validate_sequence() to the checking function design.

This is the checking function design documented at
http://wiki.nmr-relax.com/Relax_source_design#The_check_.2A.28.29_functions. The
validate_sequence() function has been renamed to check_sequence_func() and the checking object is
called check_sequence. It removes the string processing hack to convert RelaxErrors to
RelaxWarnings in the lib.sequence.read_spin_data() function, avoiding strange messages such at
"RelaxWarning: ror: The sequence data in the line..." as seen in the
Sequence.test_bug_23372_read_csv system test.
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r27794 | bugman | 2015-03-10 09:48:39 +0100 (Tue, 10 Mar 2015) | 3 lines

Small typo fix for the Sequence.test_bug_23372_read_csv system test.
........

Merged revisions 27793-27794 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r27793 | bugman | 2015-03-10 09:47:19 +0100 (Tue, 10 Mar 2015) | 11 lines

Converted the lib.sequence.validate_sequence() to the checking function design.

This is the checking function design documented at
http://wiki.nmr-relax.com/Relax_source_design#The_check_.2A.28.29_functions. The
validate_sequence() function has been renamed to check_sequence_func() and the checking object is
called check_sequence. It removes the string processing hack to convert RelaxErrors to
RelaxWarnings in the lib.sequence.read_spin_data() function, avoiding strange messages such at
"RelaxWarning: ror: The sequence data in the line..." as seen in the
Sequence.test_bug_23372_read_csv system test.
........
r27794 | bugman | 2015-03-10 09:48:39 +0100 (Tue, 10 Mar 2015) | 3 lines

Small typo fix for the Sequence.test_bug_23372_read_csv system test.
........

Small typo fix for the Sequence.test_bug_23372_read_csv system test.

Converted the lib.sequence.validate_sequence() to the checking function design.

This is the checking function design documented at
http://wiki.nmr-relax.com/Relax_source_design#The_check_.2A.28.29_functions. The
validate_sequence() function has been renamed to check_sequence_func() and the checking object is
called check_sequence. It removes the string processing hack to convert RelaxErrors to
RelaxWarnings in the lib.sequence.read_spin_data() function, avoiding strange messages such at
"RelaxWarning: ror: The sequence data in the line..." as seen in the
Sequence.test_bug_23372_read_csv system test.