relax SVN archive

Deleted the data_store.align_tensor.AlignTensorSimList.append() method.

This replacement list method was proving fatal when copy.deepcopy() is called on the alignment
tensor object. The change allows the Align_tensor.test_copy_pipes_sims system test to pass.

Copyright update.

Created the Align_tensor.test_copy_pipes_sims system test.

This demonstrates a failure of the align_tensor.copy user function when Monte Carlo simulated
tensors are present.

Fixes for the align_tensor.copy user function argument unit tests.

The tensor_from and tensor_to arguments can now be None.

Merged revisions 27771-27774 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r27771 | bugman | 2015-03-04 14:28:46 +0100 (Wed, 04 Mar 2015) | 6 lines

Created the Align_tensor.test_copy_pipes system test.

This is to show a problem in the align_tensor.copy user function when copying all tensors between
data pipes.
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r27772 | bugman | 2015-03-04 14:30:30 +0100 (Wed, 04 Mar 2015) | 5 lines

The align_tensor.copy user function 'tensor_from' argument can now be None.

This is to enable the copying of all alignment tensors from one data pipe to another.
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r27773 | bugman | 2015-03-04 14:34:07 +0100 (Wed, 04 Mar 2015) | 5 lines

Modified the pipe_control.align_tensor.align_data_exists() function to handle no tensor IDs.

If no tensor ID is supplied, this will then return True if any alignment data exists.
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r27774 | bugman | 2015-03-04 14:47:21 +0100 (Wed, 04 Mar 2015) | 6 lines

Improvement for the align_tensor.copy user function.

The user function has been modified to allow all alignment tensors to be copied between two data
pipes. This allows the Align_tensor.test_copy_pipes system test to pass.
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Improvement for the align_tensor.copy user function.

The user function has been modified to allow all alignment tensors to be copied between two data
pipes. This allows the Align_tensor.test_copy_pipes system test to pass.

Modified the pipe_control.align_tensor.align_data_exists() function to handle no tensor IDs.

If no tensor ID is supplied, this will then return True if any alignment data exists.

The align_tensor.copy user function 'tensor_from' argument can now be None.

This is to enable the copying of all alignment tensors from one data pipe to another.

Created the Align_tensor.test_copy_pipes system test.

This is to show a problem in the align_tensor.copy user function when copying all tensors between
data pipes.

Merged revisions 27769 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r27769 | bugman | 2015-03-04 13:33:45 +0100 (Wed, 04 Mar 2015) | 12 lines

Clarification of the RDC and PCS Q factors.

This affects the rdc.calc_q_factors and pcs.calc_q_factors user functions, as well as all other
operations involving the calculation of Q factors. The printouts have been modified to clarify if
the normalisation is via the tensor size (2Da^2(4 + 3R)/5) or via the sum of data squared, and the
separation of the two is now clearer. This allows for better RDC vs. PCS comparisons.

In addition, the data pipe variable names have been updated to reflect the normalisation, so it is
instantly known when looking at the XML contents of results or save files which was used. The
backwards compatibility hooks have been modified to support the data pipe variable name changes.
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