relax SVN archive

Merged revisions 27771-27774 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r27771 | bugman | 2015-03-04 14:28:46 +0100 (Wed, 04 Mar 2015) | 6 lines

Created the Align_tensor.test_copy_pipes system test.

This is to show a problem in the align_tensor.copy user function when copying all tensors between
data pipes.
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r27772 | bugman | 2015-03-04 14:30:30 +0100 (Wed, 04 Mar 2015) | 5 lines

The align_tensor.copy user function 'tensor_from' argument can now be None.

This is to enable the copying of all alignment tensors from one data pipe to another.
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r27773 | bugman | 2015-03-04 14:34:07 +0100 (Wed, 04 Mar 2015) | 5 lines

Modified the pipe_control.align_tensor.align_data_exists() function to handle no tensor IDs.

If no tensor ID is supplied, this will then return True if any alignment data exists.
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r27774 | bugman | 2015-03-04 14:47:21 +0100 (Wed, 04 Mar 2015) | 6 lines

Improvement for the align_tensor.copy user function.

The user function has been modified to allow all alignment tensors to be copied between two data
pipes. This allows the Align_tensor.test_copy_pipes system test to pass.
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Improvement for the align_tensor.copy user function.

The user function has been modified to allow all alignment tensors to be copied between two data
pipes. This allows the Align_tensor.test_copy_pipes system test to pass.

Modified the pipe_control.align_tensor.align_data_exists() function to handle no tensor IDs.

If no tensor ID is supplied, this will then return True if any alignment data exists.

The align_tensor.copy user function 'tensor_from' argument can now be None.

This is to enable the copying of all alignment tensors from one data pipe to another.

Created the Align_tensor.test_copy_pipes system test.

This is to show a problem in the align_tensor.copy user function when copying all tensors between
data pipes.

Merged revisions 27769 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r27769 | bugman | 2015-03-04 13:33:45 +0100 (Wed, 04 Mar 2015) | 12 lines

Clarification of the RDC and PCS Q factors.

This affects the rdc.calc_q_factors and pcs.calc_q_factors user functions, as well as all other
operations involving the calculation of Q factors. The printouts have been modified to clarify if
the normalisation is via the tensor size (2Da^2(4 + 3R)/5) or via the sum of data squared, and the
separation of the two is now clearer. This allows for better RDC vs. PCS comparisons.

In addition, the data pipe variable names have been updated to reflect the normalisation, so it is
instantly known when looking at the XML contents of results or save files which was used. The
backwards compatibility hooks have been modified to support the data pipe variable name changes.
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Clarification of the RDC and PCS Q factors.

This affects the rdc.calc_q_factors and pcs.calc_q_factors user functions, as well as all other
operations involving the calculation of Q factors. The printouts have been modified to clarify if
the normalisation is via the tensor size (2Da^2(4 + 3R)/5) or via the sum of data squared, and the
separation of the two is now clearer. This allows for better RDC vs. PCS comparisons.

In addition, the data pipe variable names have been updated to reflect the normalisation, so it is
instantly known when looking at the XML contents of results or save files which was used. The
backwards compatibility hooks have been modified to support the data pipe variable name changes.

Merged revisions 27763-27767 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r27763 | bugman | 2015-03-03 17:34:39 +0100 (Tue, 03 Mar 2015) | 5 lines

Created the Rdc.test_corr_plot system test to check the rdc.corr_plot user function.

This shows that this poorly tested function works correctly.
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r27764 | bugman | 2015-03-03 17:40:22 +0100 (Tue, 03 Mar 2015) | 5 lines

Created the Pcs.test_corr_plot system test to check the pcs.corr_plot user function.

This user function is poorly tested, and this test triggers a series of bugs.
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r27765 | bugman | 2015-03-03 17:42:30 +0100 (Tue, 03 Mar 2015) | 6 lines

Added the 'title' and 'subtitle' arguments to the pcs.corr_plot user function.

This problem was detected by the new Pcs.test_corr_plot system test. The pcs.corr_plot user
function now matches the rdc.corr_plot user function in terms of arguments.
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r27766 | bugman | 2015-03-03 17:46:21 +0100 (Tue, 03 Mar 2015) | 3 lines

Fix for the pcs.corr_plot user function when the spin containers have no element information.
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r27767 | bugman | 2015-03-03 17:50:02 +0100 (Tue, 03 Mar 2015) | 5 lines

Completed the Pcs.test_corr_plot system test.

The file contents are now known and have been carefully checking in Grace.
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Completed the Pcs.test_corr_plot system test.

The file contents are now known and have been carefully checking in Grace.

Fix for the pcs.corr_plot user function when the spin containers have no element information.