relax SVN archive

svn+ssh://bugman@.../svn/relax/trunk

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r27690 | bugman | 2015-02-20 10:07:31 +0100 (Fri, 20 Feb 2015) | 7 lines

Improved the RelaxWarning for missing atom numbers in the PDB CONECT records.

This is for the structure.read_pdb user function. Now only one warning is given for the entire PDB
file listing all of the missing atom numbers rather than one warning per missing atom. This can
significantly compact the warnings, removing a lot of repetition.
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r27691 | bugman | 2015-02-20 10:23:44 +0100 (Fri, 20 Feb 2015) | 8 lines

Improved the quality of the printouts from the structure.read_pdb user function.

This also affects the structure.read_gaussian and structure.read_xyz user functions. The messages
about adding new molecules or merging with existing molecules has been significantly improved. The
text with the model information is now only printed if the model number is present in the PDB file
or has been supplied by the user.
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r27692 | bugman | 2015-02-20 11:26:56 +0100 (Fri, 20 Feb 2015) | 10 lines

Fixes for all of the PDB documentation HTML links in the docstrings.

The PDB have shifted their documentation from http://www.wwpdb.org/documentation/format33/v3.3.html
to http://www.wwpdb.org/documentation/file-format/format33/v3.3.html, stupidly without redirects.
This will create dead links in the relax API documentation at http://www.nmr-relax.com/api/3.3/, as
well as the older API documentation (http://www.nmr-relax.com/api/2.2/,
http://www.nmr-relax.com/api/3.0/, http://www.nmr-relax.com/api/3.1/,
http://www.nmr-relax.com/api/3.2/).
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