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Modified the structure.read_pdb user function backend to skip water molecules.

All residues with the name 'HOH' are now skipped when loading PDB files. This is implemented in the
MolContainer.fill_object_from_pdb() method, and a RelaxWarning is printed listing the residue
numbers of all skipped waters.

bugman 2015-02-11

changed /trunk/lib/structure/internal/molecules.py
/trunk/lib/structure/internal/molecules.py Diff Switch to side-by-side view
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