Menu

Commit [r27619]  Maximize  Restore  History

Merged revisions 27616-27618 via svnmerge from

svn+ssh://bugman@.../svn/relax/trunk

........
r27616 | bugman | 2015-02-10 13:08:00 +0100 (Tue, 10 Feb 2015) | 6 lines

Created the Structure.test_atomic_fluctuations_no_match system test.

This demonstrates a failure in the operation of the structure.atomic_fluctuations user function when
the supplied atom ID matches no atoms.
........
r27617 | bugman | 2015-02-10 13:15:55 +0100 (Tue, 10 Feb 2015) | 6 lines

Fixes for the lib.structure.internal.coordinates.assemble_coord_array() function.

The problem was uncovered by the Structure.test_atomic_fluctuations_no_match system test. The
function can now handle no data being passed in.
........
r27618 | bugman | 2015-02-10 13:19:26 +0100 (Tue, 10 Feb 2015) | 8 lines

Fixes for the pipe_control.structure.main.assemble_structural_coordinates() function.

The function will now raise a RelaxError if no structural data matching the atom ID can be found.
The problem was uncovered by the Structure.test_atomic_fluctuations_no_match system test. The fix
affects the structure.atomic_fluctuations, structure.displacement, structure.find_pivot,
structure.rmsd, structure.superimpose, and structure.web_of_motion user functions.
........

bugman 2015-02-10

changed /branches/frame_order_cleanup
changed /branches/frame_order_cleanup/lib/structure/internal/coordinates.py
changed /branches/frame_order_cleanup/pipe_control/structure/main.py
changed /branches/frame_order_cleanup/test_suite/system_tests/structure.py
/branches/frame_order_cleanup/lib/structure/internal/coordinates.py Diff Switch to side-by-side view
Loading...
/branches/frame_order_cleanup/pipe_control/structure/main.py Diff Switch to side-by-side view
Loading...
/branches/frame_order_cleanup/test_suite/system_tests/structure.py Diff Switch to side-by-side view
Loading...
Want the latest updates on software, tech news, and AI?
Get latest updates about software, tech news, and AI from SourceForge directly in your inbox once a month.