relax SVN archive

Created empty unit test infrastructure for testing the lib.structure.internal.coordinates module.

Created the Structure.test_align_molecules_end_truncation system test.

This is to demonstrate a failure of the common residue detection algorithm using multiple pairwise
alignments in the backend of the structure.align and other multiple structure based user functions.

Fix for the Structure.test_displacement system test - the molecule IDs needed updating.

Large simplification of the atomic coordinate assembly code in the internal structural object.

This is in the lib.structure.internal.coordinates.assemble_coord_array() function. The logic of the
function has recently changed due to the introduction of the pairwise sequence alignments. This
caused a lot of code to now be redundant, and also incorrect in certain cases. This simplification
fixes the problem caught by the Structure.test_align_molecules2 system test.

Created the Structure.test_align_molecules2 system test.

This is to demonstrate a failure condition in the structure.align user function.

Spelling fixes for the CHANGES document.

Updated the relax version number to 3.3.5 on the http://www.nmr-relax.com/api/index.html webpage.

Updated the relax API documentation at http://www.nmr-relax.com/api/3.3/ to version 3.3.5.

Updated the relax HTML manual at http://www.nmr-relax.com/manual/index.html to version 3.3.5.

Updated the http://www.nmr-relax.com/download.html webpage for relax 3.3.5.