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Introduced the nested_params_ave_dom_pos argument to the frame order auto-analysis.

This allows the average domain position to be set to no rotations and translations rather than
taking the average position from the rotor or free-rotor model. This can be useful when large
motions are present causing the rigid model to have unreasonable domain positions.

bugman 2015-01-27

changed /branches/frame_order_cleanup/auto_analyses/frame_order.py
/branches/frame_order_cleanup/auto_analyses/frame_order.py Diff Switch to side-by-side view
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