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Created the lib.sequence_alignment.align_protein module for the sequence alignment of proteins.

This general module currently implements the align_pairwise() function for the pairwise alignment of
protein sequences. It provides the infrastructure for specifying gap starting and extension
penalties, choosing the alignment algorithm (currently only the Needleman-Wunsch sequence alignment
algorithm as 'NW70'), and choosing the substitution matrix (currently only BLOSUM62). The function
provides lots of printouts for user feedback.

bugman 2015-01-21

changed /trunk/lib/sequence_alignment/__init__.py
added /trunk/lib/sequence_alignment/align_protein.py
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/trunk/lib/sequence_alignment/align_protein.py Diff Switch to side-by-side view
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