relax SVN archive

Updated README file about nmrglue.

Task #7873 (https://gna.org/task/index.php?7873): Write wrapper function to nmrglue, to read .ft2 files and process them.
Homepage: http://www.nmrglue.com/
Link to nmrglue discussion: https://groups.google.com/forum/#!forum/nmrglue-discuss
The code is develop at Github: https://github.com/jjhelmus/nmrglue/
Google code: https://code.google.com/p/nmrglue/
Documentation: http://nmrglue.readthedocs.org/en/latest/index.html

Moved readme file for nmrglue.

Task #7873 (https://gna.org/task/index.php?7873): Write wrapper function to nmrglue, to read .ft2 files and process them.
Homepage: http://www.nmrglue.com/
Link to nmrglue discussion: https://groups.google.com/forum/#!forum/nmrglue-discuss
The code is develop at Github: https://github.com/jjhelmus/nmrglue/
Google code: https://code.google.com/p/nmrglue/
Documentation: http://nmrglue.readthedocs.org/en/latest/index.html

Merged revisions 27167 via svnmerge from
svn+ssh://tlinnet@.../svn/relax/trunk

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r27167 | bugman | 2015-01-14 17:00:51 +0100 (Wed, 14 Jan 2015) | 10 lines

Fix for bug #23187 (https://gna.org/bugs/?23187).

This is the problem whereby opening the spin viewer window, deleting a residue, and then reopening
the spin viewer crashes relax.

This change completes the spin viewer update_*() functions. The prune_list variable was initialised
but not used. Now it is used to store the keys of the items to delete, and then the items are
deleted at the end in a new loop so that the loop over the dictionary keys is not corrupted.
........

Changed systemtests for nmrglue, to reflect 0.5 version.

Task #7873 (https://gna.org/task/index.php?7873): Write wrapper function to nmrglue, to read .ft2 files and process them.
Homepage: http://www.nmrglue.com/
Link to nmrglue discussion: https://groups.google.com/forum/#!forum/nmrglue-discuss
The code is develop at Github: https://github.com/jjhelmus/nmrglue/
Google code: https://code.google.com/p/nmrglue/
Documentation: http://nmrglue.readthedocs.org/en/latest/index.html

Changed loading of version 0.5 to be standard for nmrglue.

Task #7873 (https://gna.org/task/index.php?7873): Write wrapper function to nmrglue, to read .ft2 files and process them.
Homepage: http://www.nmrglue.com/
Link to nmrglue discussion: https://groups.google.com/forum/#!forum/nmrglue-discuss
The code is develop at Github: https://github.com/jjhelmus/nmrglue/
Google code: https://code.google.com/p/nmrglue/
Documentation: http://nmrglue.readthedocs.org/en/latest/index.html

Deleted all binary files for nmrglue test suite, to save space.

Task #7873 (https://gna.org/task/index.php?7873): Write wrapper function to nmrglue, to read .ft2 files and process them.
Homepage: http://www.nmrglue.com/
Link to nmrglue discussion: https://groups.google.com/forum/#!forum/nmrglue-discuss
The code is develop at Github: https://github.com/jjhelmus/nmrglue/
Google code: https://code.google.com/p/nmrglue/
Documentation: http://nmrglue.readthedocs.org/en/latest/index.html

Added files for version 0.5 of nmrglue.

Task #7873 (https://gna.org/task/index.php?7873): Write wrapper function to nmrglue, to read .ft2 files and process them.
Homepage: http://www.nmrglue.com/
Link to nmrglue discussion: https://groups.google.com/forum/#!forum/nmrglue-discuss
The code is develop at Github: https://github.com/jjhelmus/nmrglue/
Google code: https://code.google.com/p/nmrglue/
Documentation: http://nmrglue.readthedocs.org/en/latest/index.html

Removal of nmrglue version 4.0.

Task #7873 (https://gna.org/task/index.php?7873): Write wrapper function to nmrglue, to read .ft2 files and process them.
Homepage: http://www.nmrglue.com/
Link to nmrglue discussion: https://groups.google.com/forum/#!forum/nmrglue-discuss
The code is develop at Github: https://github.com/jjhelmus/nmrglue/
Google code: https://code.google.com/p/nmrglue/
Documentation: http://nmrglue.readthedocs.org/en/latest/index.html

Fix for bug #23187 (https://gna.org/bugs/?23187).

This is the problem whereby opening the spin viewer window, deleting a residue, and then reopening
the spin viewer crashes relax.

This change completes the spin viewer update_*() functions. The prune_list variable was initialised
but not used. Now it is used to store the keys of the items to delete, and then the items are
deleted at the end in a new loop so that the loop over the dictionary keys is not corrupted.

Merged revisions 27159-27165 via svnmerge from
svn+ssh://tlinnet@.../svn/relax/trunk

........
r27159 | tlinnet | 2015-01-14 14:45:17 +0100 (Wed, 14 Jan 2015) | 3 lines

Added save state for test of bug 23186.

Bug #23186 (https://gna.org/bugs/index.php?23186): Error calculation of individual parameter "dw" from Monte-Carlo, is based on first spin.
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r27160 | tlinnet | 2015-01-14 14:45:20 +0100 (Wed, 14 Jan 2015) | 3 lines

Added systemtest "Relax_disp.test_bug_23186_cluster_error_calc_dw", which shows the failure of monte carlo simulations error calculations.

Bug #23186 (https://gna.org/bugs/index.php?23186): Error calculation of individual parameter "dw" from Monte-Carlo, is based on first spin.
........
r27161 | tlinnet | 2015-01-14 14:55:37 +0100 (Wed, 14 Jan 2015) | 3 lines

Added additional test for r2a parameter.

Bug #23186 (https://gna.org/bugs/index.php?23186): Error calculation of individual parameter "dw" from Monte-Carlo, is based on first spin.
........
r27162 | tlinnet | 2015-01-14 15:20:02 +0100 (Wed, 14 Jan 2015) | 5 lines

Attempt to implement GUI test: --gui-tests General.test_bug_23187_residue_delete_gui

This will NOT catch the error.

bug #23187: (https://gna.org/bugs/index.php?23187): Deleting residue in GUI, and then open spin viewer crashes relax.
........
r27163 | tlinnet | 2015-01-14 15:25:07 +0100 (Wed, 14 Jan 2015) | 3 lines

Added test for spin independet error of k_AB.

Bug #23186 (https://gna.org/bugs/index.php?23186): Error calculation of individual parameter "dw" from Monte-Carlo, is based on first spin.
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r27164 | bugman | 2015-01-14 15:35:01 +0100 (Wed, 14 Jan 2015) | 8 lines

Fix for the showing of the spin viewer window in the GUI tests.

The show_tree() method of the main GUI window class was not calling the custom
self.spin_viewer.Show() method, as required to set up the observer objects required to keep the spin
viewer window updated. The value of status.show_gui was blocking this. Instead the show argument
of this Show() method is being set to status.show_gui to allow the method to always be executed.
........
r27165 | tlinnet | 2015-01-14 16:10:03 +0100 (Wed, 14 Jan 2015) | 3 lines

Fix in dispersion API, to set error value for clustered values.

Bug #23186 (https://gna.org/bugs/index.php?23186): Error calculation of individual parameter "dw" from Monte-Carlo, is based on first spin.
........