relax / SVN archive Commit Log

Commit	Date
[r2716] by varioustoxins tidied code and added comments, code is now 4 space indented task 3621 https://gna.org/task/?3621	2006-10-31 11:31:13	Tree
[r2715] by bugman Created a branch of the 1.3 line for an overhaul of the test suite and to implement unit tests. This is in response to the many discussions in the thread following Andrew Perry's post at https://mail.gna.org/public/relax-devel/2006-10/msg00172.html (Message-id: <c225763e0610292348w78ce48bfw2d0c6a41c72d0b@...>). A good summary of the changes is given in Andrew's post at https://mail.gna.org/public/relax-devel/2006-10/msg00192.html (Message-id: <c225763e0610302038k55863c5ct165b68ffa4c0180c@...>).	2006-10-31 09:00:55	Tree
[r2714] by bugman Ported r2713 from the 'tensor_pdb' branch. The command used was: $ svn merge -r2712:2713 svn+ssh://bugman@.../svn/relax/branches/tensor_pdb/ This adds the text "re-run relax with the '--debug' flag" to the RelaxFault error class.	2006-10-31 08:10:59	Tree
[r2713] by bugman Added the text "re-run relax with the '--debug' flag" to the RelaxFault error class.	2006-10-31 08:04:22	Tree
[r2712] by bugman Added RelaxImplementError for raising an error when code is executed which hasn't been implemented. The PyMOL macro functions now call this error.	2006-10-31 08:03:15	Tree
[r2711] by bugman Changed all references from Molmol to PyMOL in the PyMOL code. The macro fns raise RelaxErrors. The 'self.macro_exec()' and 'self.write()' functions raise RelaxErrors saying that the functions have not been implemented yet. The 'pymol.cartoon()' user function has been shifted to the top of the function list in the 'prompt/pymol.py' file.	2006-10-31 08:02:16	Tree
[r2710] by bugman Implemented the 'pymol.tensor_pdb()' user function. The numerous Molmol commands have been replaced by a single PyMOL load command.	2006-10-31 08:01:00	Tree
[r2709] by bugman Implemented the 'pymol.cartoon()' user function. This was modified from the 'molmol.ribbon()' user function. The molmol commands have been replaced with commands to hide everything, show the cartoon, and colour the cartoon by secondary structure.	2006-10-31 07:59:50	Tree
[r2708] by bugman The 'pymol.view()' user function now works. A number of calls to pipes located at 'self.relax.data.molmol' where changed to 'self.relax.data.pymol'. The Molmol 'InitAll' and loading functions where changed to the PyMOL equivalents. Now PyMOL executes and opens up the PDB file.	2006-10-31 07:57:07	Tree
[r2707] by bugman Ported r2705 and r2706 from the 1.2 line. The command used was: $ svn merge -r2704:2706 svn+ssh://bugman@.../svn/relax/1.2 This fixes bug #7583 (https://gna.org/bugs/?7583) and fixes a problem with one of the comments in 'specific_fns/model_free.py'.	2006-10-31 07:31:08	Tree

[r2716] by varioustoxins

tidied code and added comments, code is now 4 space indented

task 3621 https://gna.org/task/?3621

2006-10-31 11:31:13

[r2715] by bugman

Created a branch of the 1.3 line for an overhaul of the test suite and to implement unit tests.

This is in response to the many discussions in the thread following Andrew Perry's post at
https://mail.gna.org/public/relax-devel/2006-10/msg00172.html (Message-id:
<c225763e0610292348w78ce48bfw2d0c6a41c72d0b@...>).

A good summary of the changes is given in Andrew's post at
https://mail.gna.org/public/relax-devel/2006-10/msg00192.html (Message-id:
<c225763e0610302038k55863c5ct165b68ffa4c0180c@...>).

2006-10-31 09:00:55

Tree

[r2714] by bugman

Ported r2713 from the 'tensor_pdb' branch.

The command used was:
$ svn merge -r2712:2713 svn+ssh://bugman@.../svn/relax/branches/tensor_pdb/

This adds the text "re-run relax with the '--debug' flag" to the RelaxFault error class.

2006-10-31 08:10:59

Tree

[r2713] by bugman

Added the text "re-run relax with the '--debug' flag" to the RelaxFault error class.

2006-10-31 08:04:22

Tree

[r2712] by bugman

Added RelaxImplementError for raising an error when code is executed which hasn't been implemented.

The PyMOL macro functions now call this error.

2006-10-31 08:03:15

Tree

[r2711] by bugman

Changed all references from Molmol to PyMOL in the PyMOL code. The macro fns raise RelaxErrors.

The 'self.macro_exec()' and 'self.write()' functions raise RelaxErrors saying that the functions
have not been implemented yet. The 'pymol.cartoon()' user function has been shifted to the top of
the function list in the 'prompt/pymol.py' file.

2006-10-31 08:02:16

Tree

[r2710] by bugman

Implemented the 'pymol.tensor_pdb()' user function.

The numerous Molmol commands have been replaced by a single PyMOL load command.

2006-10-31 08:01:00

Tree

[r2709] by bugman

Implemented the 'pymol.cartoon()' user function.

This was modified from the 'molmol.ribbon()' user function. The molmol commands have been replaced
with commands to hide everything, show the cartoon, and colour the cartoon by secondary structure.

2006-10-31 07:59:50

Tree

[r2708] by bugman

The 'pymol.view()' user function now works.

A number of calls to pipes located at 'self.relax.data.molmol' where changed to
'self.relax.data.pymol'. The Molmol 'InitAll' and loading functions where changed to the PyMOL
equivalents. Now PyMOL executes and opens up the PDB file.

2006-10-31 07:57:07

Tree

[r2707] by bugman

Ported r2705 and r2706 from the 1.2 line.

The command used was:
$ svn merge -r2704:2706 svn+ssh://bugman@.../svn/relax/1.2

This fixes bug #7583 (https://gna.org/bugs/?7583) and fixes a problem with one of the comments in
'specific_fns/model_free.py'.

2006-10-31 07:31:08

Tree

relax SVN archive

Molecular dynamics by NMR data analysis

SVN archive Commit Log