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Commit Date  
[r27137] by bugman

Docstring fixes for the Structure.test_atomic_fluctuations_gnuplot system test.

This was pointing to the structure.rmsd user function instead of structure.atomic_fluctuations.

2014-12-18 15:46:11 Tree
[r27136] by bugman

Updated the Structure.test_atomic_fluctuations_gnuplot system test.

This is for the gnuplot correlation_matrix() plotting API changes which affect the
structure.atomic_fluctuations user function.

2014-12-18 15:45:24 Tree
[r27135] by bugman

Improvement in the comments from the gnuplot correlation_matrix() plotting API function.

2014-12-18 15:17:41 Tree
[r27134] by bugman

Significantly expanded the gnuplot script from via the correlation_matrix() plotting API function.

This is for the structure.atomic_fluctuations user function. The output terminal is now set to EPS,
the colour map changed from the default to a blue-red map, labels have been added, the plot is now
square, and comments are now included throughout the script to help a user hand modify it after
creation.

2014-12-18 15:08:32 Tree
[r27133] by bugman

The gnuplot correlation_matrix() plotting API function now creates a text file of the data.

The lib.plotting.gnuplot.correlation_matrix() function now calls the
lib.plotting.text.correlation_matrix() function prior to creating the gnuplot script.

2014-12-18 11:30:37 Tree
[r27132] by bugman

Fix for the structure.atomic_fluctuations user function backend.

The pipe_control.structure.main.atomic_fluctuations() function no longer opens the output file.

2014-12-18 11:28:49 Tree
[r27131] by bugman

More simplifications for the structure.atomic_fluctuations user function backend.

2014-12-18 11:25:01 Tree
[r27130] by bugman

Shifted the matrix output of the structure.atomic_fluctuations user function into lib.plotting.text.

The new lib.plotting.text module will be used by the relax library plotting API to output data into
plain text format. The current correlation_matrix() function, which has been added to the API
correlation_matrix() function dictionary, simply has the file writing code of the
structure.atomic_fluctuations user function. This significantly simplifies the user function.

2014-12-18 11:23:42 Tree
[r27129] by bugman

Enabled the gnuplot format for the structure.atomic_fluctuations user function.

This uses the plotting API correlation_matrix() function for visualisation. The change allows the
Structure.test_atomic_fluctuations_gnuplot system test to pass.

2014-12-18 11:13:07 Tree
[r27128] by bugman

Implemented a very basic gnuplot backend for the correlation_matrix() plotting API function.

This is in the new lib.plotting.gnuplot module. It creates an incredibly basic gnuplot script for
visualising the correlation matrix, assuming a text file has already been created.

2014-12-18 11:07:24 Tree
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