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Fix for the displace_id and molecules arguments of the structure.align user function.

The atom ID used for the translations and rotations is now properly constructed from the molecule
names in the molecules list and the displace_id string.

bugman 2014-12-12

changed /trunk/pipe_control/structure/main.py
/trunk/pipe_control/structure/main.py Diff Switch to side-by-side view
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