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Created the Structure.test_rmsd_molecules system test.

This will be used to implement a new molecules argument for the structure.rmsd user function so that
the RMSD between different molecules rather than different models can be calculated.

bugman 2014-12-10

changed /trunk/test_suite/system_tests/structure.py
/trunk/test_suite/system_tests/structure.py Diff Switch to side-by-side view
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