relax SVN archive

Initial support for PyMOL.

The 'prompt' and 'generic_fns' Molmol files have been copied to new PyMOL files. The classes have
been renamed and setup within the prompt interface or the main generic functions class. A number of
instances where 'molmol' was written have been replaced with 'pymol'. Much work is still left. For
example PyMOL will not execute in script mode as it terminates saying:

PyMOL: normal program termination.

once the pipe is closed (after finishing the script and relax terminating).

Removed a number of unused import statements in the Molmol prompt interface file.

Created the user function 'molmol.tensor_pdb()' for displaying the diffusion tensor in Molmol.

The function takes the pre-generated diffusion tensor PDB file, created with the user function
'pdb.create_tensor_pdb()', and displays it in Molmol over the loaded structure.

Improvements to the docstring of the 'molmol.ribbon()' user function.

Created the user function 'molmol.ribbon()'.

This function applies the Molmol ribbon style and is equivalent to clicking on 'ribbon' in the
Molmol side menu.

Implemented the 'molmol.command()' user function.

The user function did previously exist, but it hadn't been implemented in the generic code. The
user function was calling the wrong function 'self.write' in 'generic_fns/molmol.py'.

Improvements to the printed out messages of the 'pdb.create_tensor_pdb()' user function.

Changed the CONECT record algorithm (for the tensor PDB) to allow more than four bonded atoms.

Multiple CONECT records are now generated for an atom if it is bonded to more than 4 other atoms.

Sorted the HETATM and CONECT records by atomic number in the tensor PDB file.

Because of the diffusion tensor symmetry, the axes where extended in both the pos and neg directions.