relax SVN archive

Merged revisions 26874-26876,26885 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r26874 | bugman | 2014-11-30 11:10:41 +0100 (Sun, 30 Nov 2014) | 5 lines

Updated the manual_c_module.py C module compilation development script for the recent changes.

The exponential_inv.c and exponential_sat.c files need to be compiled as well.
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r26875 | bugman | 2014-11-30 11:11:45 +0100 (Sun, 30 Nov 2014) | 5 lines

Python 3 fix for the relax_fit_exp_3param_inv_neg.py system test script.

The xrange() function does not exist in Python 3, so was replaced by range().
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r26876 | bugman | 2014-11-30 18:38:12 +0100 (Sun, 30 Nov 2014) | 5 lines

Updated the memory_leak_test_relax_fit.py development script for the C module changes.

This is only the docstring description which changed.
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r26885 | bugman | 2014-12-01 20:18:24 +0100 (Mon, 01 Dec 2014) | 6 lines

Epydoc docstring fixes for the lib.io module - keyword arguments were not correctly identified.

These were identified by Troels in the post at
http://thread.gmane.org/gmane.science.nmr.relax.scm/24565/focus=7384
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Merged revisions 26901-26902 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r26901 | bugman | 2014-12-02 21:39:10 +0100 (Tue, 02 Dec 2014) | 9 lines

Created the State.test_bug_23017_ieee_754_multidim_numpy_arrays system test.

This is to catch bug #23017 (https://gna.org/bugs/?23017), the multidimensional numpy arrays are not
being stored as IEEE 754 arrays in the XML state and results files.

This test checks a rank-2 float64 numpy array stored in the current data pipe against what the IEEE
754 int list should be for it.
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r26902 | bugman | 2014-12-02 21:42:14 +0100 (Tue, 02 Dec 2014) | 9 lines

Simple fix for bug #23017 (https://gna.org/bugs/?23017).

This is the multidimensional numpy arrays are not being stored as IEEE 754 arrays in the XML state
and results files. The problem was a relatively recent regression caused by a change to the
is_float_matrix() function of the lib.arg_check module. It was simply that the default dims keyword
argument value was changed from None to (3, 3). Therefore any call to the function without
supplying the dims argument would fail if the matrix was not of the (3, 3) shape.
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Simple fix for bug #23017 (https://gna.org/bugs/?23017).

This is the multidimensional numpy arrays are not being stored as IEEE 754 arrays in the XML state
and results files. The problem was a relatively recent regression caused by a change to the
is_float_matrix() function of the lib.arg_check module. It was simply that the default dims keyword
argument value was changed from None to (3, 3). Therefore any call to the function without
supplying the dims argument would fail if the matrix was not of the (3, 3) shape.

Created the State.test_bug_23017_ieee_754_multidim_numpy_arrays system test.

This is to catch bug #23017 (https://gna.org/bugs/?23017), the multidimensional numpy arrays are not
being stored as IEEE 754 arrays in the XML state and results files.

This test checks a rank-2 float64 numpy array stored in the current data pipe against what the IEEE
754 int list should be for it.

Fix for the Frame_order.test_simulate_pseudo_ellipse_xz_plane_tilt system test name.

This was mislabelled as Frame_order.test_simulate_pseudo_ellipse_xy_plane_tilt.

Created the Frame_order.test_simulate_pseudo_ellipse_torsionless_z_axis system test.

This is to check the frame_order.simulate user function for the torsionless pseudo-ellipse model
along the z-axis.

Created the Frame_order.test_simulate_pseudo_ellipse_xy_plane_tilt system test.

This is to check the frame_order.simulate user function for the pseudo-ellipse model with a xz-plane
tilt.

Created the Frame_order.test_simulate_pseudo_ellipse_free_rotor_z_axis system test.

This is to check the frame_order.simulate user function for the free rotor pseudo-ellipse model
along the z-axis.

Created the Frame_order.test_simulate_iso_cone_xz_plane_tilt system test.

This is to check the frame_order.simulate user function for the torsionless isotropic cone model
with a xz-plane tilt.

Merged revisions 26874-26876,26885 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r26874 | bugman | 2014-11-30 11:10:41 +0100 (Sun, 30 Nov 2014) | 5 lines

Updated the manual_c_module.py C module compilation development script for the recent changes.

The exponential_inv.c and exponential_sat.c files need to be compiled as well.
........
r26875 | bugman | 2014-11-30 11:11:45 +0100 (Sun, 30 Nov 2014) | 5 lines

Python 3 fix for the relax_fit_exp_3param_inv_neg.py system test script.

The xrange() function does not exist in Python 3, so was replaced by range().
........
r26876 | bugman | 2014-11-30 18:38:12 +0100 (Sun, 30 Nov 2014) | 5 lines

Updated the memory_leak_test_relax_fit.py development script for the C module changes.

This is only the docstring description which changed.
........
r26885 | bugman | 2014-12-01 20:18:24 +0100 (Mon, 01 Dec 2014) | 6 lines

Epydoc docstring fixes for the lib.io module - keyword arguments were not correctly identified.

These were identified by Troels in the post at
http://thread.gmane.org/gmane.science.nmr.relax.scm/24565/focus=7384
........