relax SVN archive

Fix for missing comment about the return of the Axis instance for additional decoration of plot.

Task #7873 (https://gna.org/task/index.php?7873): Write wrapper function to nmrglue, to read .ft2 files and process them.
Homepage: http://www.nmrglue.com/
Link to nmrglue discussion: https://groups.google.com/forum/#!forum/nmrglue-discuss
The code is develop at Github: https://github.com/jjhelmus/nmrglue/
Google code: https://code.google.com/p/nmrglue/
Documentation: http://nmrglue.readthedocs.org/en/latest/index.html

Added additonal systemtest for plotting data. Nmrglue.xtest_plot_contour_cpmg.

This shoves, that the automatic ppm scale finding is working.

Task #7873 (https://gna.org/task/index.php?7873): Write wrapper function to nmrglue, to read .ft2 files and process them.
Homepage: http://www.nmrglue.com/
Link to nmrglue discussion: https://groups.google.com/forum/#!forum/nmrglue-discuss
The code is develop at Github: https://github.com/jjhelmus/nmrglue/
Google code: https://code.google.com/p/nmrglue/
Documentation: http://nmrglue.readthedocs.org/en/latest/index.html

Added additional nmrPipe processed .ft2 files for nmrglue testing.

Task #7873 (https://gna.org/task/index.php?7873): Write wrapper function to nmrglue, to read .ft2 files and process them.
Homepage: http://www.nmrglue.com/
Link to nmrglue discussion: https://groups.google.com/forum/#!forum/nmrglue-discuss
The code is develop at Github: https://github.com/jjhelmus/nmrglue/
Google code: https://code.google.com/p/nmrglue/
Documentation: http://nmrglue.readthedocs.org/en/latest/index.html

Created the Frame_order.test_simulate_iso_cone_torsionless_z_axis system test.

This is to check the frame_order.simulate user function for the torsionless isotropic cone model
along the z-axis.

Created the Frame_order.test_simulate_iso_cone_free_rotor_z_axis system test.

This is to check the frame_order.simulate user function for the free rotor isotropic cone model
along the z-axis.

Created the Frame_order.test_simulate_iso_cone_z_axis system test.

This is to check the frame_order.simulate user function for the isotropic cone model along the
z-axis.

Merged revisions 26794-26795,26798 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r26794 | bugman | 2014-11-27 21:48:08 +0100 (Thu, 27 Nov 2014) | 3 lines

Updated the target_functions package __all__ list to include the relax_fit* modules.
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r26795 | bugman | 2014-11-27 21:50:50 +0100 (Thu, 27 Nov 2014) | 3 lines

Modified the package __all__ list checking unit test to accept *.so C modules.
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r26798 | bugman | 2014-11-28 09:34:02 +0100 (Fri, 28 Nov 2014) | 9 lines

Bug fix for the pymol.view user function for when no PDB file exists.

The pymol.view user function would fail with an AttributeError when the currently loaded data does
not exist as a PDB file. This is now caught and the non-existent PDB is no longer displayed. A
better solution might be to dump all the current structural data into a temporary file and load
that, all within a try-finally statement to be sure to delete the temporary file. This solution may
not be what the user is interested in anyway.
........

Bug fix for the pymol.view user function for when no PDB file exists.

The pymol.view user function would fail with an AttributeError when the currently loaded data does
not exist as a PDB file. This is now caught and the non-existent PDB is no longer displayed. A
better solution might be to dump all the current structural data into a temporary file and load
that, all within a try-finally statement to be sure to delete the temporary file. This solution may
not be what the user is interested in anyway.

Created the Frame_order.test_simulate_free_rotor_z_axis system test.

This is to check the frame_order.simulate user function for the free rotor model along the z-axis.

Fix for the Frame_order.test_pdb_model_free_rotor_xz_plane_tilt system test.

This was broken while implementing the Frame_order.test_simulate_rotor_z_axis system test. Instead
of shifting the 6 atom structure so its CoM is the pivot of the motion when creating the atoms, now
the Frame_order.test_simulate_rotor_z_axis system test sets the average domain translation vector to
the pivot to achieve the same result. This preserves the z-axis orientation of the rotor models.