relax SVN archive

Updated the formula in the description of the relax_fit.select_model user function.

Shifted the C code Jacobian functions into the new target_functions.relax_fit_wrapper module.

This shifts all of the relaxation curve-fitting C code access into the
target_functions.relax_fit_wrapper module so that the rest of relax does not need to handle the C
code. This will allow for new models to be very easily supported, as they would all be set up in
this target function module.

A small code rearrangement to create the new target_functions.relax_fit_wrapper module.

This follows from the idea at https://gna.org/task/?7415#comment6. The *func_wrapper() functions of
the specific_analyses.relax_fit.optimisation module have been shifted out and converted to class
methods to create the target_functions.relax_fit_wrapper module. This will be used to abstract away
all of the C code, and will form the infrastructure to allow new exponential curves to be quickly
supported.

The modules of the specific_analyses.relax_fit and specific_analyses.relax_disp packages now import
the target_functions.relax_fit_wrapper.Relax_fit_opt target function class and use that instead.

Improved the description for the relax_fit.select_model user function.

Simplified all of the Frame_order.test_pdb_model_* system tests.

The atom, residue and 3D coordinate checking in all these methods has been shifted into the common
check_pdb_model_representation() method. This dramatically decreases the amount of code in the
system test file.

Fix for the Barnes & Nobel link at http://www.nmr-relax.com/features.html.

The '&' instead of '&' problem was identified by the W3C validator (http://validator.w3.org/).

Added the type attribute for the Google gadget custom search <script> tag.

This is for http://www.nmr-relax.com/communication.html. The problem was identified by the W3C
validator (http://validator.w3.org/).

Added relax scripts and PDB files which match the Frame_order.test_test_pdb_model_* system tests.

These were used to construct and visually check the tests in a molecular viewer. These could be a
useful reference, so have been added to the repository.

Merged revisions 26746-26747,26760 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r26746 | bugman | 2014-11-26 11:12:30 +0100 (Wed, 26 Nov 2014) | 8 lines

Fixes for the links at the bottom of all HTML manual pages.

This is for the automatically generated documentation at http://www.nmr-relax.com/manual/index.html,
created using latex2html. The links all require double quotes, and some a trailing '/'. The links
fixed are http://www.nmr-relax.com, http://www.nmr-relax.com/manual/ and
http://download.gna.org/relax/manual/relax.pdf.
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r26747 | bugman | 2014-11-26 11:21:53 +0100 (Wed, 26 Nov 2014) | 7 lines

Removed the repository backup file text from the relax manual.

This is for http://www.nmr-relax.com/manual/Latest_sources_the_relax_repositories.html. The gzipped
repository dump file has not been created by Gna! for many, many years. The problem was identified
by the W3C link checker (http://validator.w3.org/checklink).
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r26760 | bugman | 2014-11-26 14:22:47 +0100 (Wed, 26 Nov 2014) | 5 lines

Updated all of the http://www.nmr-relax.com/manual/ links in the lib.dispersion package.

This is for all of the individual model pages in the HTML manual.
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Converted a Gna! news link to http://wiki.nmr-relax.com/Relax_3.1.0.

This is because the wiki release notes are much better for navigation.