relax SVN archive

Modified the frame_order.pdb_model user function backend to handle missing structural data.

The create_ave_pos() function of the specific_analyses.frame_order.geometric module now checks that
cdp.structure exists, and if not a warning is given and the PDB file creating is skipped.

Started to create the Frame_order.test_pdb_model_rotor system test.

This will be used to check that the PDB representations of the frame order motions are correct.

Python 2.5 fix for the align_tensor.display user function.

The new irreducible spherical tensor coefficient printout was failing as the float.real variable was
introduced from Python 2.6 onwards.

Merged revisions 26653 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r26653 | bugman | 2014-11-20 11:24:53 +0100 (Thu, 20 Nov 2014) | 6 lines

Backported the relax 3.3.2 CHANGES file changes to trunk (a little late).

The command used was:
svn merge -r26571:r26572 svn+ssh://bugman@.../svn/relax/tags/3.3.2 .
........

Merged revisions 26653 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r26653 | bugman | 2014-11-20 11:24:53 +0100 (Thu, 20 Nov 2014) | 6 lines

Backported the relax 3.3.2 CHANGES file changes to trunk (a little late).

The command used was:
svn merge -r26571:r26572 svn+ssh://bugman@.../svn/relax/tags/3.3.2 .
........

Backported the relax 3.3.2 CHANGES file changes to trunk (a little late).

The command used was:
svn merge -r26571:r26572 svn+ssh://bugman@.../svn/relax/tags/3.3.2 .

Merged revisions 26642-26646,26648-26650 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r26642 | bugman | 2014-11-20 08:59:06 +0100 (Thu, 20 Nov 2014) | 5 lines

Updated the align_tensor.display user function to output the irreducible spherical harmonic weights.

This is the alignment tensor in the {A-2, A-1, A0, A1, A2} notation.
........
r26643 | bugman | 2014-11-20 09:15:37 +0100 (Thu, 20 Nov 2014) | 5 lines

Expanded the 'irreducible 5D' text in the align_tensor.matrix_angles and align_tensor.svd user functions.

This now explains that these are the coefficients for the spherical harmonic decomposition.
........
r26644 | bugman | 2014-11-20 09:23:13 +0100 (Thu, 20 Nov 2014) | 3 lines

Improved the text for the irreducible tensor notation in the align_tensor.display user function.
........
r26645 | bugman | 2014-11-20 09:27:21 +0100 (Thu, 20 Nov 2014) | 3 lines

Formatting fix for the magnetic susceptibility tensor part of the align_tensor.display user function.
........
r26646 | bugman | 2014-11-20 09:53:10 +0100 (Thu, 20 Nov 2014) | 3 lines

More improvements for the align_tensor.matrix_angles user function description.
........
r26648 | bugman | 2014-11-20 11:00:38 +0100 (Thu, 20 Nov 2014) | 3 lines

Epydoc docstring fixes and expansion for the lib.io.sort_filenames() function.
........
r26649 | bugman | 2014-11-20 11:03:31 +0100 (Thu, 20 Nov 2014) | 7 lines

Epydoc docstring fixes for the lib.spectrum.nmrpipe module.

This is for the API documentation at http://www.nmr-relax.com/api/index.html. The
show_apod_rmsd_to_file() and show_apod_rmsd_dir_to_files() function docstrings have both been
modified.
........
r26650 | bugman | 2014-11-20 11:08:22 +0100 (Thu, 20 Nov 2014) | 6 lines

Epydoc docstring fixes for the pipe_control.opendx.map() function.

This is for http://www.nmr-relax.com/api/3.3/pipe_control.opendx-module.html#map. The fixes include
whitespace and textwrapping changes.
........

Merged revisions 26642-26646,26648-26650 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r26642 | bugman | 2014-11-20 08:59:06 +0100 (Thu, 20 Nov 2014) | 5 lines

Updated the align_tensor.display user function to output the irreducible spherical harmonic weights.

This is the alignment tensor in the {A-2, A-1, A0, A1, A2} notation.
........
r26643 | bugman | 2014-11-20 09:15:37 +0100 (Thu, 20 Nov 2014) | 5 lines

Expanded the 'irreducible 5D' text in the align_tensor.matrix_angles and align_tensor.svd user functions.

This now explains that these are the coefficients for the spherical harmonic decomposition.
........
r26644 | bugman | 2014-11-20 09:23:13 +0100 (Thu, 20 Nov 2014) | 3 lines

Improved the text for the irreducible tensor notation in the align_tensor.display user function.
........
r26645 | bugman | 2014-11-20 09:27:21 +0100 (Thu, 20 Nov 2014) | 3 lines

Formatting fix for the magnetic susceptibility tensor part of the align_tensor.display user function.
........
r26646 | bugman | 2014-11-20 09:53:10 +0100 (Thu, 20 Nov 2014) | 3 lines

More improvements for the align_tensor.matrix_angles user function description.
........
r26648 | bugman | 2014-11-20 11:00:38 +0100 (Thu, 20 Nov 2014) | 3 lines

Epydoc docstring fixes and expansion for the lib.io.sort_filenames() function.
........
r26649 | bugman | 2014-11-20 11:03:31 +0100 (Thu, 20 Nov 2014) | 7 lines

Epydoc docstring fixes for the lib.spectrum.nmrpipe module.

This is for the API documentation at http://www.nmr-relax.com/api/index.html. The
show_apod_rmsd_to_file() and show_apod_rmsd_dir_to_files() function docstrings have both been
modified.
........
r26650 | bugman | 2014-11-20 11:08:22 +0100 (Thu, 20 Nov 2014) | 6 lines

Epydoc docstring fixes for the pipe_control.opendx.map() function.

This is for http://www.nmr-relax.com/api/3.3/pipe_control.opendx-module.html#map. The fixes include
whitespace and textwrapping changes.
........

Epydoc docstring fixes for the pipe_control.opendx.map() function.

This is for http://www.nmr-relax.com/api/3.3/pipe_control.opendx-module.html#map. The fixes include
whitespace and textwrapping changes.

Epydoc docstring fixes for the lib.spectrum.nmrpipe module.

This is for the API documentation at http://www.nmr-relax.com/api/index.html. The
show_apod_rmsd_to_file() and show_apod_rmsd_dir_to_files() function docstrings have both been
modified.