relax SVN archive

Created the Grace graphs for the rotor model 1st degree frame order matrix elements.

These are the values calculated directly from the lib.frame_order modules. The graphs were
previously all zeros.

Implemented the compile_1st_matrix_rotor() function.

This is for the lib.frame_order.rotor module. The function will calculate the 1st degree in-frame
frame order matrix for the rotor model.

Updated frame_order_simulate.py to be much faster in simulating the frame order matrix elements.

The script also matches the Grace file output of the frame_order_solution.py script. The inside()
method has been renamed for the pseudo-ellipse and the infrastructure for adding support for the
other frame order models has been added. By shifting calculations outside of the loops, the script
is now many orders of magnitude faster.

Added all of the Grace graphs produced by the frame_order_solution.py script.

These are the graphs of the 1st and 2nd degree frame order matrix elements, calculated using the
functions in lib.frame_order.

Redesign of the frame_order_solution.py script for calculating the frame order matrix elements.

This script now loops over all models, all motional frame orientations, and all order parameters to
generate the Grace graphs of all 1st and 2nd degree frame order matrix elements. Therefore the
script only needs to be executed once. The script also now calculates a point at zero (slightly
shifted to 0.01 to avoid artifacts).

Modified the frame order matrix Grace graph to EPS/PNG format conversion script.

Grace is now used to create a PostScript file and then the ps2eps program is called to convert to
EPS. This produces much better EPS files for inclusion into LaTeX documents.

Modified the frame order matrix Grace graph to EPS/PNG format conversion script.

The binary being called is now 'grace' rather than 'xmgrace'. This allows different Grace versions
to be used.

Created an executable Python script for mass converting the frame order matrix Grace graphs.

The script converts the *.agr files to EPS and PNG files.

Fix for the compile_1st_matrix_pseudo_ellipse() function.

This function of the lib.frame_order.pseudo_ellipse module now can rotate the 1st degree frame order
matrix out of its eigenframe and into the PDB frame.

Modified the rotate_daeg() function as this is independent of the degree of the frame order matrix.

This is the lib.frame_order.matrix_ops.rotate_daeg() function.