relax SVN archive

Incorporated the contents of the summarise.py script into the frame order auto-analysis module.

This has been converted into the summarise() function which will generate a results summary table as
the analysis is still running.

Additions to the frame order auto-analysis documentation.

Improvements for the usage of the frame_order.quad_int user function in the auto-analysis.

The frame_order.quad_int user function is now called even when the Optimisation_settings object
quad_int flag is False. This allows for switching between the SciPy quadratic integration and the
quasi-random Sobol' integration, as the SciPy quadratic integration can now be turned off.

Activated the SciPy quadratic integration in the frame order auto-analysis.

If the Optimisation_settings object has been set up with the quad_int flag, then the auto-analysis
will skip the sobol_setup() method and instead directly call the frame_order.quad_int user function.
Optimisation will then use the SciPy quadratic integration rather than the quasi-random Sobol'
integration.

Added the ability to specify a pre-run directory in the frame order auto-analysis.

This will be used for refinement purposes. If the new pre_run_dir argument, modelled on the
relaxation dispersion auto-analysis, is supplied then results files will be loaded from this
directory and the base data pipe copying and PCS subset optimisation steps will be skipped. The
model nesting algorithm is also deactivated.

The frame order auto-analysis Optimisation_settings object now supports the quad_int flag.

This is for activating the SciPy quadratic integration. It is accepted as an argument for the
add_grid() and add_min() methods, and it returned by the new get_grid_quad_int() and
get_min_quad_int() methods.

Removed the skip_tests argument for the Frame_order system tests __init__() method.

This argument, which was used to manually turn on or off the blacklisted tests, is no longer needed
due to the new --no-skip relax command line flag which will enable all blacklisted tests.

Merged revisions 26017 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r26017 | bugman | 2014-09-24 17:16:31 +0200 (Wed, 24 Sep 2014) | 5 lines

Reactivated the Relax_disp.test_m61b_data_to_m61b system test, but blacklisted it.

This will allow the test to be executed if the --no-skip command line option is used.
........

Reactivated the Relax_disp.test_m61b_data_to_m61b system test, but blacklisted it.

This will allow the test to be executed if the --no-skip command line option is used.

Changed the chi2 value checks in the Frame_order.test_cam_quad_int_double_rotor* system tests.

These were the values for the quasi-random Sobol' integration and needed updating for the SciPy
quadratic integration.