relax SVN archive

Activated the SciPy quadratic integration in the frame order auto-analysis.

If the Optimisation_settings object has been set up with the quad_int flag, then the auto-analysis
will skip the sobol_setup() method and instead directly call the frame_order.quad_int user function.
Optimisation will then use the SciPy quadratic integration rather than the quasi-random Sobol'
integration.

Added the ability to specify a pre-run directory in the frame order auto-analysis.

This will be used for refinement purposes. If the new pre_run_dir argument, modelled on the
relaxation dispersion auto-analysis, is supplied then results files will be loaded from this
directory and the base data pipe copying and PCS subset optimisation steps will be skipped. The
model nesting algorithm is also deactivated.

The frame order auto-analysis Optimisation_settings object now supports the quad_int flag.

This is for activating the SciPy quadratic integration. It is accepted as an argument for the
add_grid() and add_min() methods, and it returned by the new get_grid_quad_int() and
get_min_quad_int() methods.

Removed the skip_tests argument for the Frame_order system tests __init__() method.

This argument, which was used to manually turn on or off the blacklisted tests, is no longer needed
due to the new --no-skip relax command line flag which will enable all blacklisted tests.

Merged revisions 26017 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r26017 | bugman | 2014-09-24 17:16:31 +0200 (Wed, 24 Sep 2014) | 5 lines

Reactivated the Relax_disp.test_m61b_data_to_m61b system test, but blacklisted it.

This will allow the test to be executed if the --no-skip command line option is used.
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Reactivated the Relax_disp.test_m61b_data_to_m61b system test, but blacklisted it.

This will allow the test to be executed if the --no-skip command line option is used.

Changed the chi2 value checks in the Frame_order.test_cam_quad_int_double_rotor* system tests.

These were the values for the quasi-random Sobol' integration and needed updating for the SciPy
quadratic integration.

Implemented the SciPy quadratic integration target function for the double rotor frame order model.

This simply follows from what all the other quadratic integration target functions and
lib.frame_order module functions do.

Merged revisions 26013 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r26013 | bugman | 2014-09-24 14:56:45 +0200 (Wed, 24 Sep 2014) | 5 lines

Fix for the test suite summary printout function for the new --no-skip option.

The relax status object was clashing with a variable of the same name.
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Fix for the test suite summary printout function for the new --no-skip option.

The relax status object was clashing with a variable of the same name.