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Converted all structural object methods to use the selection object rather that atom ID strings.

This should have a significant impact on the speed of certain operations within relax. The most
obvious effect will be a huge speed up of the interatom.define user function. There should be speed
ups with a number of other user functions relating to structural information. All parts of relax
have been updated for the change.

bugman 2014-09-23

changed /trunk/lib/structure/internal/object.py
changed /trunk/pipe_control/interatomic.py
changed /trunk/pipe_control/structure/main.py
changed /trunk/pipe_control/structure/mass.py
changed /trunk/test_suite/unit_tests/_pipe_control/_structure/test_internal.py
/trunk/lib/structure/internal/object.py Diff Switch to side-by-side view
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/trunk/pipe_control/interatomic.py Diff Switch to side-by-side view
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/trunk/pipe_control/structure/main.py Diff Switch to side-by-side view
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/trunk/pipe_control/structure/mass.py Diff Switch to side-by-side view
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/trunk/test_suite/unit_tests/_pipe_control/_structure/test_internal.py Diff Switch to side-by-side view
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