relax SVN archive

Updated my copyright notice for 2014 for all files changed.

These were identified using the command in the find_missing_copyrights document.

Even more improvements to the shell command for finding missing copyrights.

Updated the document to find missing copyright notices.

Simplified the atomic position averaging warning in the frame order analysis.

Instead of throwing a warning for each spin, one warning for all spins is now given. This should
make the output a lot less verbose.

Created a document which explains how missing copyrights can be found.

Merged revisions 25900,25902-25904,25906 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r25900 | tlinnet | 2014-09-18 17:46:44 +0200 (Thu, 18 Sep 2014) | 3 lines

Reordered functions in repeated analysis protocol.

Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data.
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r25902 | tlinnet | 2014-09-18 18:04:46 +0200 (Thu, 18 Sep 2014) | 5 lines

Added more check of methods to the systemtest Relax_disp.test_repeat_cpmg().

This actually shows, that user function relax_disp.r20_from_min_r2eff maybe is broken.

Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data.
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r25903 | tlinnet | 2014-09-18 19:00:17 +0200 (Thu, 18 Sep 2014) | 3 lines

Fix for the testing of method is finished when called.

Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data.
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r25904 | tlinnet | 2014-09-18 19:00:19 +0200 (Thu, 18 Sep 2014) | 3 lines

Turned on minimisation in systemtest Relax_disp.test_repeat_cpmg().

Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data.
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r25906 | bugman | 2014-09-19 09:13:03 +0200 (Fri, 19 Sep 2014) | 9 lines

The lib.spectrum.nmrpipe has been made independent of the relax source code.

This was discussed at http://thread.gmane.org/gmane.science.nmr.relax.scm/23357/focus=7103.

The change allows the software verification tests pass. The dep_check module cannot be used in the
relax lib package. Only modules from within lib are allowed to be imported into modules of lib.
The fix now allows the full test suite to pass and hence new relax releases are once again possible.
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The lib.spectrum.nmrpipe has been made independent of the relax source code.

This was discussed at http://thread.gmane.org/gmane.science.nmr.relax.scm/23357/focus=7103.

The change allows the software verification tests pass. The dep_check module cannot be used in the
relax lib package. Only modules from within lib are allowed to be imported into modules of lib.
The fix now allows the full test suite to pass and hence new relax releases are once again possible.

The starting time of the axis permutation model optimisations is now output.

This is in the frame order auto-analysis. This call to the time user function occurred for the
normal models, so extending it to the permuted axes models makes the output more consistent.

Turned on minimisation in systemtest Relax_disp.test_repeat_cpmg().

Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data.

Fix for the testing of method is finished when called.

Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data.