relax SVN archive

Added the missing PDB files which should have been committed previously.

This are in test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/.

Added the missing PDB files which should have been committed previously.

This are in test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_z_le_xy.

Created the other isotropic cone condition z <= x = y.

As there are no constraints in this model, this condition should not result in any major
differences, just the size of the cone being different and the optimisation having to decrease the
cone angle significantly to mimic the rotor.

Added the Gimp XCF file for the logo of the relax wiki (http://wiki.nmr-relax.com).

Created set of files showing the axis permutation problem for the isotopic cone frame order model.

This shows that there are two minima. However one has a chi-squared value of ~1, and the other a
value of ~150. Nevertheless, the optimisation could be trapped in the non-global minimum so the
frame_order.permute_axes user function should be used for the isotopic cones as well, just in case.

Added support for the isotopic cone models to the frame_order.permute_axes user function.

This is a simpler setup, but it uses the same permutation algorithm as derived for the
pseudo-ellipse models. Instead of setting the x and y cone angles separately, they are instead
averaged. And as the cone axis is undefined in the xy plane, the axis has been randomly selected as
being the axis perpendicular to both the z-axis and the reference frame x-axis.

Visualisation files for all of the pseudo-ellipse permutations by frame_order.permute_axes.

This includes the x <= z <= y and z <= x <= y conditions (the previous files were for x <= y <= z).
In all permutation combinations, optimisation has been performed to demonstrate that these are all
local minima. These all approximate the rotor when using the CaM frame order rotor model synthetic
data.

Fix for the frame_order.permute_axes user function.

One of the 6 permutations had the x and y axes switched (the x <= z <= y condition, permutation A).

Added redirects for all renamed user functions for the HTML version of the manual.

Set up a new redirect for the frq.set to spectrometer.frequency user function name change.

This is for the HTML manual.