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Created some test data files for visualising the frame order axis permutation.

This uses the CaM frame order synthetic data for the rotor model to visualise the pseudo-ellipse
frame order model axis permutations. The initial conversion sets the pseudo-ellipse torsion angle
cone_sigma_max to the rotor opening half-angle, and the pseudo-elliptic cone opening to close to
zero. Then the axis permutations are performed. All three solutions are optimised. PDB
representations before and after optimisation are included to illustrate any problems.

bugman 2014-09-10

added /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations
added /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/fo_A.pdb.gz
added /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/fo_B.pdb.gz
added /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/fo_orig_A.pdb.gz
added /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/fo_orig_B.pdb.gz
added /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/fo_orig_perm_A_A.pdb.gz
added /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/fo_orig_perm_A_B.pdb.gz
added /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/fo_orig_perm_B_A.pdb.gz
added /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/fo_orig_perm_B_B.pdb.gz
added /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/fo_perm_A_A.pdb.gz
added /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/fo_perm_A_B.pdb.gz
added /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/fo_perm_B_A.pdb.gz
added /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/fo_perm_B_B.pdb.gz
added /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/pseudo-ellipse.log
added /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/pseudo-ellipse.py
added /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/pymol_display.py
/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/pseudo-ellipse.log Diff Switch to side-by-side view
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/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/pseudo-ellipse.py Diff Switch to side-by-side view
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/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/permutations/pymol_display.py Diff Switch to side-by-side view
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