relax SVN archive

Updated the dispersion auto-analysis for the universal 'No Rex' model.

The 'No Rex R1rho off res' references have all been deleted. The model conversion logic is also no
longer needed and has been deleted.

Merger of the 'No Rex' and 'No Rex R1rho off res' models in the specific_analyses.relax_disp package.

In the 'variables' module, all *_NOREX_R1RHO variables have simply been deleted and the MODEL_LIST_*
structures updated.

For the 'data' module, the is_r1_optimised() function was modified to catch the 'No Rex' model and
to then use the cdp.exp_type_list structure to determine if the experiment type is EXP_TYPE_R1RHO.
This will be modified in the future by using a function for determining if the current experiment is
on or off-resonance. The return_r1_data() and return_r1_err_data() functions have also been
modified to check if R1 values are fit rather than if the model is in MODEL_LIST_R1RHO_OFF_RES.

In the 'model' module, in addition to deleting all *_NOREX_R1RHO variables, the convert_no_rex()
function has also been deleted as it no longer serves a purpose.

In the 'checks' module, all 'No Rex R1rho off res' model references have been replaced with 'No
Rex'.

Altered the number of Monte-Carlo simulations in test script to 2000.

Removed results files to allow the Relax_disp.test_r1rho_kjaergaard_missing_r1 system test to pass.

These are the test_suite/shared_data/dispersion/Kjaergaard_et_al_2013/check_graphs/mc_2000/ results
files for the 'No Rex' and 'DPL94' models, as well as the final run.

This commit is to allow the test to temporarily pass. It can be reverted once a better solution is
discussed and decided upon.

Updated the relax_disp.r1_fit user function docstring.

This now includes information about which models support R1 parameter optimisation.

Merged revisions 25152-25158 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r25152 | bugman | 2014-08-21 10:37:38 +0200 (Thu, 21 Aug 2014) | 3 lines

Created the MODEL_LIST_FIT_R1 variable to keep track of dispersion models with R1 fitting support.
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r25153 | bugman | 2014-08-21 10:40:26 +0200 (Thu, 21 Aug 2014) | 6 lines

The is_r1_optimised() function now checks MODEL_LIST_FIT_R1.

If the model is not in MODEL_LIST_FIT_R1, i.e. R1 optimisation is not supported, then the function
will return False.
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r25154 | bugman | 2014-08-21 10:42:58 +0200 (Thu, 21 Aug 2014) | 5 lines

Bug fix for the updating of the Model_class.params list with 'r1'.

The is_r1_optimised() function needs to be called!
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r25155 | bugman | 2014-08-21 10:59:02 +0200 (Thu, 21 Aug 2014) | 3 lines

Removed some unused imports to allow the test_variables unit tests to pass.
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r25156 | bugman | 2014-08-21 11:05:12 +0200 (Thu, 21 Aug 2014) | 5 lines

Removed all of the MODEL_*_FIT_R1 from the remaining unit tests.

These are for the tests of the specific_analyses.relax_disp.model module.
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r25157 | bugman | 2014-08-21 11:08:52 +0200 (Thu, 21 Aug 2014) | 5 lines

Fix for the test_nesting_param_5 unit test.

The 'r1' parameter is now dynamic and hence will not be present in the initial list.
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r25158 | bugman | 2014-08-21 11:21:12 +0200 (Thu, 21 Aug 2014) | 5 lines

One final fix for the Model_class.params list with 'r1'.

The is_r1_optimised() function is now called with the model name argument, as required.
........

One final fix for the Model_class.params list with 'r1'.

The is_r1_optimised() function is now called with the model name argument, as required.

Fix for the test_nesting_param_5 unit test.

The 'r1' parameter is now dynamic and hence will not be present in the initial list.

Removed all of the MODEL_*_FIT_R1 from the remaining unit tests.

These are for the tests of the specific_analyses.relax_disp.model module.

Removed some unused imports to allow the test_variables unit tests to pass.