relax SVN archive

Implemented the pipe_control.mol_res_spin.format_info_full() function.

This follows from http://thread.gmane.org/gmane.science.nmr.relax.scm/22522/focus=6534.

This is a verbose representation of the spin information which can be used for presenting to the
user. Functions for shorter string versions will also be of great use, for example as described by
Troels at http://thread.gmane.org/gmane.science.nmr.relax.scm/22522/focus=6535.

Added the pipe_name argument to the specific_analyses.frame_order.data.generate_pivot() function.

This allows the pivot from data pipes other than the current one to be assembled and returned.

Renamed plotting sub function, to accept different file name arguments, and X-axis arguments.

This is to reuse the sub-plot function to plot against different x-axis.

Added plot of R1rho as function of theta, where interpolated against spin-lock field strenght.

sr #3124(https://gna.org/support/?3124): Grace graphs production for R1rho analysis with R2_eff as function of Omega_eff.
sr #3138(https://gna.org/support/?3138): Interpolating theta through spin-lock offset [Omega], rather than spin-lock field strength [w1].

Added functionality to function to accept how the first part of the filename is formed.

This is to prepare to re-use the same plotting function.

sr #3124(https://gna.org/support/?3124): Grace graphs production for R1rho analysis with R2_eff as function of Omega_eff.
sr #3138(https://gna.org/support/?3138): Interpolating theta through spin-lock offset [Omega], rather than spin-lock field strength [w1].

Renamed the lib.frame_order.rotor_axis module to lib.frame_order.conversions.

This module will be used for all sorts of frame order parameter conversions.

Created the lib.frame_order.rotor_axis.convert_axis_alpha_to_spherical() function.

This will convert the axis alpha angle to the equivalent spherical angles theta and phi.

Skip production of plotting r1rho r2 as function of effective field w_eff, when spin.isotope is not present.

This can happen when it is 'exp_fit' model curve fitting.

sr #3124(https://gna.org/support/?3124): Grace graphs production for R1rho analysis with R2_eff as function of Omega_eff.
sr #3138(https://gna.org/support/?3138): Interpolating theta through spin-lock offset [Omega], rather than spin-lock field strength [w1].

Replaced repeated calculation of rotating frame parameters to use function in lib/nmr.py.

sr #3124(https://gna.org/support/?3124): Grace graphs production for R1rho analysis with R2_eff as function of Omega_eff.
sr #3138(https://gna.org/support/?3138): Interpolating theta through spin-lock offset [Omega], rather than spin-lock field strength [w1].

Added function to calculate rotating frame paramters for lib/nmr.py.

This function is called several times in specific_analyses/relax_disp/data.py by plotting functions.

sr #3124(https://gna.org/support/?3124): Grace graphs production for R1rho analysis with R2_eff as function of Omega_eff.
sr #3138(https://gna.org/support/?3138): Interpolating theta through spin-lock offset [Omega], rather than spin-lock field strength [w1].

Merged revisions 24755-24757 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r24755 | bugman | 2014-07-25 16:51:16 +0200 (Fri, 25 Jul 2014) | 3 lines

Deleted the ancient optimisation_testing.py script, as this no longer works and is of no use.
........
r24756 | bugman | 2014-07-25 16:59:22 +0200 (Fri, 25 Jul 2014) | 3 lines

Some changes as identified by the Python 2 to 3 upgrade script /usr/bin/2to3.
........
r24757 | bugman | 2014-07-25 17:12:32 +0200 (Fri, 25 Jul 2014) | 3 lines

Some Python 3 fixes as identified by the 2to3 script.
........