relax SVN archive

Unit test fix for Mac OS X.

This is for the test_ns_mmq_2site_korzhnev_2005_15n_dq_data_complex128 test of
test_suite.unit_tests._lib._dispersion.test_matrix_exponential.Test_matrix_exponential. The
tests no longer check for exact values, but use the assertAlmostEqual() calls instead.

Decreased the precision the Relax_disp.test_hansen_cpmg_data_to_lm63_3site system test.

This is to allow the test to pass on Mac OS X systems.

Removed a wrong adding of empty offset dimension in the get_back_calc() function of target_functions.relax_disp().

sr #3124(https://gna.org/support/?3124): Grace graphs production for R1rho analysis with R2_eff as function of Omega_eff.
sr #3138(https://gna.org/support/?3138): Interpolating theta through spin-lock offset [Omega], rather than spin-lock field strength [w1].

Extended specific_analyses.relax_disp.optimisation.back_calc_r2eff() to handle interpolated spin-lock offset values.

sr #3124(https://gna.org/support/?3124): Grace graphs production for R1rho analysis with R2_eff as function of Omega_eff.
sr #3138(https://gna.org/support/?3138): Interpolating theta through spin-lock offset [Omega], rather than spin-lock field strength [w1].

Large extension of specific_analyses.relax_disp.data(), by adding several helper plotting functions.

This is to prepare for plotting R1rho R2 as function of effective field in rotating frame: w_eff.
R_2 = R1rho / sin^2(theta) - R_1 / tan^2(theta) = (R1rho - R_1 * cos^2(theta) ) / sin^2(theta)

sr #3124(https://gna.org/support/?3124): Grace graphs production for R1rho analysis with R2_eff as function of Omega_eff.
sr #3138(https://gna.org/support/?3138): Interpolating theta through spin-lock offset [Omega], rather than spin-lock field strength [w1].

Fix for function calling and default values of None in sup-plotting functions.

sr #3124(https://gna.org/support/?3124): Grace graphs production for R1rho analysis with R2_eff as function of Omega_eff.
sr #3138(https://gna.org/support/?3138): Interpolating theta through spin-lock offset [Omega], rather than spin-lock field strength [w1].

Split out the writing of dispersion graph files in specific_analyses.relax_disp.data.plot_disp_curves().

This is to prepare for a stand-alone function to plot R1rho graphs, interpolating theta through spin-lock offset rather than spin-lock field strength.

sr #3124(https://gna.org/support/?3124): Grace graphs production for R1rho analysis with R2_eff as function of Omega_eff.
sr #3138(https://gna.org/support/?3138): Interpolating theta through spin-lock offset [Omega], rather than spin-lock field strength [w1].

Split out the looping over frequency and offset into its own function, in function of specific_analysis.relax_disp.data.plot_disp_curves().

sr #3124(https://gna.org/support/?3124): Grace graphs production for R1rho analysis with R2_eff as function of Omega_eff.
sr #3138(https://gna.org/support/?3138): Interpolating theta through spin-lock offset [Omega], rather than spin-lock field strength [w1].

Split out the interpolating in specific_analyses.relax_disp.data.plot_disp_curves() into separate function.

This is to prepare for a interpolating function for spin-lock offset rather than spin-lock field strength for R1rho models.

sr #3124(https://gna.org/support/?3124): Grace graphs production for R1rho analysis with R2_eff as function of Omega_eff.
sr #3138(https://gna.org/support/?3138): Interpolating theta through spin-lock offset [Omega], rather than spin-lock field strength [w1].

Reverted r24736 as this was fatal for the relax information printout - the modules are required.

The command used was:
svn merge -r24736:r24735 .

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r24736 | bugman | 2014-07-25 11:20:21 +0200 (Fri, 25 Jul 2014) | 5 lines
Changed paths:
M /trunk/dep_check.py

Clean up of the dep_check module - all imported and unused modules are now deleted as well.

This cleans up the module namespace of the unused imports.
.....