relax SVN archive

Created two new model-free system tests.

These are Mf.test_m0_grid_with_grid_search and Mf.test_m0_grid_vs_m1_with_grid_search. Their aim is
to better test the grid search in a model-free analysis when parameters are preset.

Updated the minfx version number to 1.0.9 in the release checklist document.

This as of yet unreleased version contains an important fix for parallelised grid searches when the
number of increments is set to one (i.e. a preset parameter).

The diffusion_tensor.init user function can now set initial tensor parameter values of None.

This is to allow for the new grid search preset flag. Therefore allowing the values to be None
allows for a grid search to be performed by default.

Changes to the diffusion tensor initialisation in the model-free auto-analysis.

The values of the tensor are now initialised to None. This is to allow for the new grid search
preset flag which defaults to True, setting the values to None indicates that a grid search should
be performed.

Fix for the grid search setup printout when parameters are preset.

Modified all calls to the parameter object _add() base class method.

These are now all spread across multiple lines, with each argument on a separate line. This is for
easier maintenance of the specific analysis parameters, as the code is now much cleaner and argument
changes will only have diffs for that argument. It is also visually easier to see all the settings
for each parameter.

Converted the frame order analysis to the new grid bounds and scaling factor design.

The parameter object now registers the grid bounds and scaling factors for all of the dispersion
parameters. This includes the functions angle_upper_excluding_bound(), axis_alpha_upper(),
cone_angle_lower(), cone_angle_upper(), pivot_grid_bound(), pivot_x_lower(), pivot_x_upper(),
pivot_y_lower(), pivot_y_upper(), pivot_z_lower(), and pivot_z_upper() in the
specific_analyses.frame_order.parameter_object module for calculating some of these values.

The specific_analyses.frame_order.parameters.assemble_scaling_matrix() function has been deleted as
this is now provided by the upstream code in pipe_control.minimise. And the API methods
grid_search() and minimise() has been modified to accept the list of scaling matrices.

As the grid bounds and increments are now handled by the upstream pipe_control.minimise.grid_setup()
function, the setup and error checking code in the grid_search() API method was redundant and was
deleted.

Initialized merge tracking via "svnmerge" with revisions "1-24671" from
svn+ssh://tlinnet@.../svn/relax/trunk

This branch is created for the Support Request:
sr #3124(https://gna.org/support/?3124): Grace graphs production for R1rho analysis with R2_eff as function of Omega_eff.

The grid search upper and lower bound functions now must accept the incs argument.

For a few analyses, the number of grid search increments are used to remove the end point of the
grid, to remove duplicate points due to the circular nature of angles. Therefore the parameter
object grid_lower() and grid_upper() methods now send the grid increment number for each parameter
into all grid bound determining functions. The relaxation dispersion and curve-fitting analyses
have been updated for the change.