relax SVN archive

Redesign of the optimisation user functions calculate, grid_search, and minimise.

In preparation for expanding the number of optimisation user functions, these three current user
functions have been shifted into the new minimise user function class. The calculate user function
is now accessed as minimise.calculate. The grid search as minimise.grid_search. And minimisation
is via the minimise.execute user function. The icon used for the new user function class is the
Rosenbrock function or the banana optimisation problem.

As this is such a radical change, a huge number of changes in the relax source code, the sample
scripts, the user manual, and the test suite were required.

Merged revisions 24543 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r24543 | bugman | 2014-07-16 20:34:10 +0200 (Wed, 16 Jul 2014) | 3 lines

Added the missing timing module to the relax library package __all__ list.
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Added the missing timing module to the relax library package __all__ list.

Added a new set of icons for use with the minimisation user functions.

These are of the Rosenbrock function and are much better suited for small icons than the current
OpenDX 3D isosurface plots. The matplotlib figure originates from public domain code at
http://commons.wikimedia.org/wiki/File:Rosenbrock_function.svg.

Initialized merge tracking via "svnmerge" with revisions "1-24539" from
svn+ssh://bugman@.../svn/relax/trunk

Creating a branch for attempting to implement zooming grid searches.

Updated the frame order optimisation results for the CaM missing data free rotor test data.

The optimisation in the frame_order.py is now of higher precision with the number of Sobol' numeric
integration points significantly increased, especially for the Monte Carlo simulations. The new
frame order representation files have been added to the repository, as well as the intermediate
state files.

Updated the frame order optimisation results for the CaM free rotor test data.

The optimisation in the frame_order.py is now of higher precision with the number of Sobol' numeric
integration points significantly increased, especially for the Monte Carlo simulations. The new
frame order representation files have been added to the repository, as well as the intermediate
state files.

Merged revisions 24535-24536 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r24535 | bugman | 2014-07-15 12:36:47 +0200 (Tue, 15 Jul 2014) | 5 lines

Created the time user function.

This is just a shortcut for printing out the output of the time.asctime() function.
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r24536 | bugman | 2014-07-15 12:38:40 +0200 (Tue, 15 Jul 2014) | 3 lines

The time user function now uses the chronometer Oxygen icon in the GUI.
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The time user function now uses the chronometer Oxygen icon in the GUI.