relax SVN archive

Merged revisions 24505 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r24505 | bugman | 2014-07-09 20:40:06 +0200 (Wed, 09 Jul 2014) | 6 lines

Completely removed all mentions of Freecode from the release document.

The old relax links are still there (http://freecode.com/projects/nmr-relax), but Freecode is dead
(http://freecode.com/about).
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The specific_analyses.frame_order.variables module is now used throughout the frame order code.

The target function code, auto-analysis, and test suite now all use the variables defined in this
module rather than having hardcoded strings. The MODEL_LIST_NONREDUNDANT variable has been created
to exclude the redundant free rotor pseudo-ellipse which cannot be optimised, and this is used by
the auto-analysis.

Completely removed all mentions of Freecode from the release document.

The old relax links are still there (http://freecode.com/projects/nmr-relax), but Freecode is dead
(http://freecode.com/about).

The pivot point parameters in the frame order analysis are no longer scaled by 100.

This is to match the average domain position translation which is also not scaled.

Merged revisions 24454,24500-24501 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r24454 | bugman | 2014-07-04 11:31:00 +0200 (Fri, 04 Jul 2014) | 6 lines

Fix for the internal structural object MolContainer.last_residue() method.

This can now operate when no structural information is present, returning 0 instead of resulting in
an IndeError.
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r24500 | bugman | 2014-07-09 18:38:34 +0200 (Wed, 09 Jul 2014) | 5 lines

Updated the script for finding unused imports in the relax source code.

Now the file name is only printed for Python files which have unused imports.
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r24501 | bugman | 2014-07-09 19:17:38 +0200 (Wed, 09 Jul 2014) | 3 lines

Removal of many unused imports throughout the relax codebase.
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Merged revisions 24500-24501 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r24500 | bugman | 2014-07-09 18:38:34 +0200 (Wed, 09 Jul 2014) | 5 lines

Updated the script for finding unused imports in the relax source code.

Now the file name is only printed for Python files which have unused imports.
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r24501 | bugman | 2014-07-09 19:17:38 +0200 (Wed, 09 Jul 2014) | 3 lines

Removal of many unused imports throughout the relax codebase.
........

Removal of many unused imports throughout the relax codebase.

Updated the script for finding unused imports in the relax source code.

Now the file name is only printed for Python files which have unused imports.

Modified the script for recreating the frame order PDB representation and displaying it in PyMOL.

The state loading, domain redefinition, and representation creation parts have all been removed, as
these will soon all be redundant as the frame order analysis for all models is being redone. All
that remains are the pymol.frame_order() function calls for displaying all the representations.

Updated the frame order optimisation results for the CaM isotropic cone test data.

The optimisation in the frame_order.py is now of higher precision with the number of Sobol' numeric
integration points significantly increased, especially for the Monte Carlo simulations. The new
frame order representation files have been added to the repository and the old ones removed.