relax SVN archive

Reverted r24332 as this was incorrect - the data input was wrong, not the frame order matrix.

The command used was:
svn merge -r24332:r24331 .

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r24332 | bugman | 2014-06-26 16:29:46 +0200 (Thu, 26 Jun 2014) | 6 lines
Changed paths:
M /branches/frame_order_cleanup/lib/frame_order/double_rotor.py

Fix for the double rotor frame order matrix assembly function.

The rotations where applied in reverse, hence the 2nd degree frame order matrix was the Kronecker
product transpose of the correct form.
.....

Bug fix for the y-axis rotation matrix for the double rotor Sobol' integration points.

The matrix was inverted.

Merged revisions 24454 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r24454 | bugman | 2014-07-04 11:31:00 +0200 (Fri, 04 Jul 2014) | 6 lines

Fix for the internal structural object MolContainer.last_residue() method.

This can now operate when no structural information is present, returning 0 instead of resulting in
an IndeError.
........

Redesign of the geometric representation of the cone structural objects to allow for models.

The old representation was not compatible with the PDB model concept whereby each model must have
the same number of atoms. To handle this situation, the cone objects have been simplified.
Specifically the cone cap.

The old behaviour was to remove all points outside of the cone when creating the cone cap, and then
to stitch the cap to the cone edge in a subsequent step. Now the behaviour is that all points
outside of the distribution are shifted to the cone edge. This avoids the need to stitch the cap to
the edge. This behaviour means that all cones with the same inc value will have the same number of
atoms.

The cones for the pseudo-ellipses are not as nice as the latitudinal lines are not strait at the
cone edge, but at least creating multiple models with different cone sizes is now possible.

Added the geometric module to the specific_analyses.frame_order package __all__ list.

Fixes for the titles in the frame order geometric representation from frame_order.pdb_model.

There were a few bugs for a number of the frame order models preventing this code from working.

Reverted the lines under the table titles for http://www.nmr-relax.com/download.html.

Fixes for the MC simulation rotor objects in the frame order geometric representation.

The axes of the Monte Carlo simulation rotors objects were being set to the original values and not
to the simulation values.

Fix for the internal structural object MolContainer.last_residue() method.

This can now operate when no structural information is present, returning 0 instead of resulting in
an IndeError.

Removed an accidentally committed change to http://www.nmr-relax.com/download.html.