relax SVN archive

Large formatting improvements to the software tables at http://www.nmr-relax.com/download.html.

CSS is used to add transparent blue borders around the tables and under the titles or separating
releases. The tables now also stretch to use up 100% of the possible width in the div box.

Formatting improvements for the file sizes at http://www.nmr-relax.com/download.html.

The standard English ',' thousands separator is now used to better visualise the file sizes.

The file sizes in the tables at http://www.nmr-relax.com/download.html are now right justified.

This is for better formatting of the HTML.

Updated the news announcement links for relax version 3.2.3 at http://www.nmr-relax.com/download.html.

The correct link is https://gna.org/forum/forum.php?forum_id=2469.

Removed a debugging printout.

The PyMOL disable command is now used by the pymol.frame_order user function.

This is to first disable all PyMOL objects prior to loading anything, to hide the original
structures and any previous frame order representations, and then to hide all of the Monte Carlo
simulation representations. This is to simplify the picture initially presented to the user while
still allowing all elements to be easily found.

Change all of the domain user function calls in the frame order CaM test data scripts.

The domains are now identified by the molecule name rather than the range of residues. This allows
non-protein atoms, for example the Ca2+ atoms, to be rotated to the average domain position as well.

Redesign of the average domain position part of the frame_order.pdb_model user function.

The Monte Carlo simulations are now represented. If the file root is set to the default of
'ave_pos', then these will be placed in the file 'ave_pos.pdb', or a compressed version. Each
simulation is in a different model, matching the geometric representation '*_sim.pdb' files. The
original structure is copied for each model, and then rotated to the MC simulation average position.

Merged revisions 24428 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r24428 | bugman | 2014-07-03 14:22:30 +0200 (Thu, 03 Jul 2014) | 6 lines

Removed the Freecode section from the release checklist as Freecode has been permanently shut down.

The old relax links are still there (http://freecode.com/projects/nmr-relax), but Freecode is dead
(http://freecode.com/about).
........

Merged revisions 24425,24428 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r24425 | bugman | 2014-07-03 13:25:59 +0200 (Thu, 03 Jul 2014) | 10 lines

Updated the Mac OS X framework setting up instruction document.

New sections have been added for the nose and matplotlib Python packages, as nose is needed for the
numpy and scipy testing frameworks and matplotlib might be a useful optional dependency in the
future.

The mpy4py section has been updated to avoid the non-framework fink version of mpicc which cannot
produce universal binaries. A few other parts also have small edits.
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r24428 | bugman | 2014-07-03 14:22:30 +0200 (Thu, 03 Jul 2014) | 6 lines

Removed the Freecode section from the release checklist as Freecode has been permanently shut down.

The old relax links are still there (http://freecode.com/projects/nmr-relax), but Freecode is dead
(http://freecode.com/about).
........