relax SVN archive

Fixes for the frame_order.pdb_model user function for the rotor and free rotor models.

Test suite fixes for the recent redesign of the frame_order.pdb_model user function.

The frame order generate_pivot() function can now return the pivots for Monte Carlo simulations.

This is the specific_analyses.frame_order.data.generate_pivot() function. The sim_index argument
has been added to the function which will allow the pivots from the Monte Carlo simulations to be
returned. If the pivot was fixed, then the original pivot will be returned instead.

Improvements to the lib.structure.represent.rotor.rotor() function for handling models.

The 'rotor', 'rotor2', or 'rotor3' molecule name determination is now also model specific.

Merged revisions 24396,24399 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r24396 | bugman | 2014-07-02 09:50:36 +0200 (Wed, 02 Jul 2014) | 6 lines

Python 3 fixes for the entire codebase using the 2to3 script.

The command used was:
2to3 -j 4 -w -f xrange .
........
r24399 | bugman | 2014-07-02 11:46:40 +0200 (Wed, 02 Jul 2014) | 5 lines

The internal structural object add_molecule() and has_molecule() methods are now model specific.

This allows for finer control of structural object.
........

Merged revisions 24399 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r24399 | bugman | 2014-07-02 11:46:40 +0200 (Wed, 02 Jul 2014) | 5 lines

The internal structural object add_molecule() and has_molecule() methods are now model specific.

This allows for finer control of structural object.
........

The internal structural object add_molecule() and has_molecule() methods are now model specific.

This allows for finer control of structural object.

Merged revisions 24396 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r24396 | bugman | 2014-07-02 09:50:36 +0200 (Wed, 02 Jul 2014) | 6 lines

Python 3 fixes for the entire codebase using the 2to3 script.

The command used was:
2to3 -j 4 -w -f xrange .
........

Python 3 fixes using the 2to3 script.

Fatal changes to the multi.processor module were reverted.

The command used was:
2to3 -j 4 -w \
-f buffer \
-f idioms \
-f set_literal \
-f ws_comma \
-x except \
-x import \
-x imports \
-x long \
-x numliterals \
-x xrange \
.

Python 3 fixes for the entire codebase using the 2to3 script.

The command used was:
2to3 -j 4 -w -f xrange .