Commit | Date | |
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[r24375]
by
bugman
Added support for labels in the rotor geometric object for the internal structural object. The labels are created by the frame_order.pdb_model user function backend. For the double rotor The labels are then sent into the lib.structure.represent.rotor.rotor() function via the new label Finally the pymol.frame_order user function selects these atoms, hides them and then labels them |
2014-07-01 11:49:54 | Tree |
[r24374]
by
bugman
Renamed the lib.structure.represent.rotor.rotor_pdb() function to rotor(). This function is not PDB specific and it just creates a 3D structural representation of a rotor |
2014-07-01 10:51:23 | Tree |
[r24373]
by
bugman
The motional pivots for the frame order models are now labelled in the geometric representation. The pivot points are now added as a new molecule called 'pivots' in the frame_order.pdb_model user |
2014-07-01 10:42:41 | Tree |
[r24372]
by
bugman
Renaming of the residues of the cone geometric representation. The cone apex or centre is now the CNC residue, the cone axis is now CNX and the cone edge is now |
2014-07-01 10:18:03 | Tree |
2014-07-01 10:04:41 | Tree | |
[r24370]
by
bugman
Improvements to the internal structural object _get_chemical_name() method. This now uses a translation table to convert the hetID or residue name into a description, for |
2014-07-01 09:59:05 | Tree |
[r24369]
by
bugman
Renamed the residues of the rotor geometric object representation. The rotor axis atoms now belong to the RTX residue and the propeller blades to the RTB residue. The |
2014-07-01 09:46:58 | Tree |
[r24368]
by
bugman
Refactored the frame order geometric motional representation code. The code of the specific_analyses.frame_order.geometric.create_geometric_rep() function has been |
2014-07-01 09:40:21 | Tree |
[r24367]
by
bugman
Fixes for the cone geometric representation in the internal structural object. The representation can now be created if the given MoleculeContainer object is empty. |
2014-07-01 09:11:25 | Tree |
[r24366]
by
bugman
Fix for the pivots created by the specific_analyses.frame_order.data.generate_pivot() function. This is for the double rotor model where the 1st mode of motion is about the 2nd pivot, and the 2nd |
2014-07-01 07:13:39 | Tree |